Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 284,587 | T→A | 13.3% | intergenic (+34/+29) | betT‑II → / ← atsK | choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 284,587 | 0 | T | A | 13.3% | 119.1 / 7.6 | 51 | intergenic (+34/+29) | betT‑II/atsK | choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase |
Reads supporting (aligned to +/- strand): ref base T (24/20); new base A (3/4); total (27/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.93e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCATTC > NC_002947/284446‑284730 | gAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCcgcg < 3:33452/149‑1 (MQ=255) gAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGT‑CTGGCCTCTTCGCGGGCAAGCCCGCGa < 4:8815/149‑1 (MQ=255) gCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAaga < 2:213110/149‑1 (MQ=255) gCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCAAGCCCGCGAaga < 6:173129/149‑1 (MQ=255) cAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAATGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAaga‑g < 5:103419/149‑1 (MQ=255) aGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGAACAAGCTCTACAGTCCAGGCCACTTAGCGGGGAAGCCCGCGAAGA‑gg > 7:2040/1‑149 (MQ=255) ccAGAACTATCACCTGGTGGGCTACAGCAAGGAGCATATCAACAACCACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGcc < 1:374020/149‑1 (MQ=255) tATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGaa > 1:127118/1‑136 (MQ=255) tATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGaa < 2:127118/136‑1 (MQ=255) gACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGGCCGCGAAGC‑GGCCAGCCAGGCaa > 8:154455/1‑149 (MQ=255) aCCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAAc > 6:134708/1‑149 (MQ=255) cAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGACGGCCAGACAGGCAACCGCTAGAAAGGt < 1:16877/149‑1 (MQ=255) cAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTg > 1:291891/1‑149 (MQ=255) gCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTa < 7:49653/139‑1 (MQ=255) gCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTa > 8:49653/1‑139 (MQ=255) cAAGGAGCAGATCGTCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCAt > 7:29976/1‑149 (MQ=255) gAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCAGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATccc > 1:112204/1‑148 (MQ=255) aGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGt < 5:141355/137‑1 (MQ=255) aGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGt > 6:141355/1‑137 (MQ=255) gATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGa > 3:70394/1‑149 (MQ=255) atcatcAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGAt > 5:106161/1‑149 (MQ=255) aaCGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGc > 1:318677/1‑149 (MQ=255) aTCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGT‑CTGGCCTCTTCGCGGGCAAGCCCGCGAaga‑g < 3:222468/96‑1 (MQ=37) aTCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGT‑CTGGCCTCTTCGCGGGCAAGCCCGCGAaga‑g > 4:222468/1‑96 (MQ=37) cTCGACCAGTACGAGCGGCACATTCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCa < 2:291891/148‑1 (MQ=255) cTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTa < 5:73514/113‑1 (MQ=255) cTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTa > 6:73514/1‑113 (MQ=255) tCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCAt > 2:121654/1‑148 (MQ=255) ccAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCAccc < 2:256973/149‑1 (MQ=255) tACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACccgccg < 8:29976/149‑1 (MQ=255) tACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACccgccg < 6:106161/149‑1 (MQ=255) cGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTGCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCACCACCCGCCGGTtcgg < 4:70394/149‑1 (MQ=255) ccgttctcAGCACCTGCCCGTGGGCCGCTCCCCATGCTCTCCTGTCCGGGCCTCTGCGGGGGCTTCCCCGCTAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTtcggt < 1:373990/141‑1 (MQ=255) gTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAatcat > 6:295084/1‑149 (MQ=255) ccTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGt < 5:323545/116‑1 (MQ=255) ccTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGAGCATCCCCAAGGATGGTCGCCCGGt > 6:323545/1‑116 (MQ=255) gCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCg > 7:78759/1‑149 (MQ=255) gCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCg > 2:8634/1‑149 (MQ=255) cGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTg < 8:78759/149‑1 (MQ=255) cAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCACCCACCGCAAAATGCTGGGTCAcg > 4:165123/1‑149 (MQ=255) aaGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGTCAACCGCTAGAAAGGTGCATCCCCAAGGAAGGTCGCCCGGTGCATCACCCGCCGGATCGGTCGGAAATCATCCACCGCAAAATGCTGGGTCAcgc > 8:169890/1‑149 (MQ=255) aaGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCAcgc > 8:174856/1‑149 (MQ=255) ctgtcctgGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTcc > 3:33865/1‑149 (MQ=255) cggcccgggCCTCTGCCCGGGCTTCCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTcc < 4:33865/142‑1 (MQ=255) ctgGCCTCTTCCCGGGCATGCCCGCCAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCCCCCGCCGCTTCGGTCGGTAATAATCCACCCCAAAATGCTGGGTAACGCGGTTGTCCCAGaa > 6:242850/1‑149 (MQ=255) tgGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTcc < 4:26547/143‑1 (MQ=255) tgGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTcc > 3:26547/1‑143 (MQ=255) ctctTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCa > 2:31301/1‑149 (MQ=255) tctTCGCGGGCAAGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGc < 2:314093/113‑1 (MQ=255) tctTCGCGGGCAAGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGc > 1:314093/1‑113 (MQ=255) gggCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCATtc < 1:31301/149‑1 (MQ=255) | GAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGCGGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGA‑GGCCAGACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCCAGAACGCCACGTCATTC > NC_002947/284446‑284730 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |