Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,459,946 | A→T | 9.8% | L139Q (CTG→CAG) | PP_3075 ← | transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,459,946 | 0 | A | T | 9.8% | 172.7 / 7.3 | 61 | L139Q (CTG→CAG) | PP_3075 | transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base A (28/27); new base T (3/3); total (31/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01 |
CGCTGCTGCCGACGAACTGGGCGAAGCTGTATTTGGCCTGGCGGGCGCGCAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCTCACCACATCGCGCATCAGGCTGCCGGGGA > NC_002947/3459812‑3460093 | cgcTGCTGCCGACGAACTGGGCGAAGCTGTATTTGGCCTGGCGGGCGCGCAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATg < 7:160592/149‑1 (MQ=255) ccGACGAACTGGGCGAAGCTGTATTTGGCCTGGCGGGCGCGCAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGa < 2:315700/148‑1 (MQ=255) acgaACTGGGCGAAGCTGTATTTGGCCTGGCGGGCGCGCAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAg > 5:147963/1‑149 (MQ=255) cTGGGCGAAGCTGTATTTGGCCTGGCGGGCGCGCAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAgcgcgc > 8:222042/1‑149 (MQ=255) cTGGGCGAAGCTGTATTTGGCCTGGCGGGCGCGCAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAgcgcg > 6:292497/1‑148 (MQ=255) cTGGGCGAAGCTGTATTTGGCCTGGCGGGCGCGCAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAgcgcg < 5:292497/148‑1 (MQ=255) ggCGAAGCTGTATTTGGCCTGGCGGGCGCGCAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCt < 1:230744/149‑1 (MQ=255) cGAAGCTGTATTTGGCCTGGCGGGCGCGCAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTgg > 2:306358/1‑149 (MQ=255) tGTATTTGGCCTGGCGGGCGCGCAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCg > 7:140250/1‑149 (MQ=255) gTATTTGGCCTGGCGGGCGCGCAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGt < 6:147963/149‑1 (MQ=255) gTATTTGGCCTGGCGGGCGCGCAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGCCCATcca > 7:325772/1‑147 (MQ=255) tATTTGGCCTGGCGGGCGCGCAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGt < 2:98308/148‑1 (MQ=255) tttGGCCTGGCGGGCGCGCAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGa < 1:306358/149‑1 (MQ=255) cTGGCGGGCGCGCAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATggg > 7:289434/1‑147 (MQ=255) gggcgCGCAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGgcg > 6:1997/1‑148 (MQ=255) gcgcAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGa > 6:336713/1‑149 (MQ=255) aGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGaccac < 3:31060/149‑1 (MQ=255) cGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACg > 5:22341/1‑149 (MQ=255) cGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTc < 8:289434/149‑1 (MQ=255) ggTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGt > 4:159317/1‑149 (MQ=255) aGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGc < 6:22341/149‑1 (MQ=255) aGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGc < 5:336713/149‑1 (MQ=255) ccAGTTCCTGCTGCAGGCGGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCgtg < 8:286925/149‑1 (MQ=255) gctgcATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATg > 7:210645/1‑149 (MQ=255) gcATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTg < 6:232775/88‑1 (MQ=255) gcATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTg > 5:232775/1‑88 (MQ=255) tGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAg > 8:146615/1‑103 (MQ=255) tGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAg < 7:146615/103‑1 (MQ=255) tGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCcag > 1:339379/1‑148 (MQ=255) cTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCcagcag > 5:246769/1‑149 (MQ=255) cTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCcagcag > 2:57982/1‑149 (MQ=255) tGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCcagcag > 8:122475/1‑148 (MQ=255) gcgcTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCATGATGggcc < 3:159317/149‑1 (MQ=255) cgcTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGggccg < 6:246769/149‑1 (MQ=255) gcagcGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTg < 7:222042/149‑1 (MQ=255) agcGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCt > 6:119724/1‑149 (MQ=255) agcGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCt < 6:25554/149‑1 (MQ=255) gcggcgACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGggccgg > 8:155220/1‑140 (MQ=255) gcggcgACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGggccgg < 7:155220/140‑1 (MQ=255) gcggcgACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCt > 4:12947/1‑148 (MQ=255) cggcgACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCTca < 5:119724/149‑1 (MQ=255) ttggctttGCGCTGTTCGACGAACTGCGCAGAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCTcacca > 2:171507/8‑148 (MQ=255) gACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGc > 6:47217/1‑114 (MQ=255) gACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGc < 5:47217/114‑1 (MQ=255) gACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCTcacca > 1:265408/1‑148 (MQ=255) aCAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCTCACcaca < 2:339379/149‑1 (MQ=255) ggctttGCGCTGTTCGACGAACTGCGC‑‑AGCC‑‑TGTCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCTCACCACATcgc < 2:339510/143‑1 (MQ=37) tttGCGCTGTTCGACGAACTGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCTCACCACATcgc > 3:130481/3‑149 (MQ=255) tttGCGCTGTTCGACGAACTGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCTCACCACATcgc > 7:99961/3‑149 (MQ=255) tGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCTCACCACATcgcg > 3:74902/1‑148 (MQ=255) gcgcAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCCCCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCTCACCACATCgcgc > 3:3899/1‑148 (MQ=255) cgcAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCTCACCACATCGCGCAt > 5:364589/1‑149 (MQ=255) gctgTTCGACGAACTGCGCAGAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCTCACCACATCGCGCATc < 1:171507/146‑1 (MQ=255) tcgAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTg < 6:77786/123‑1 (MQ=255) tcgAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTg > 5:77786/1‑123 (MQ=255) acgAACTGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCTCACCACATCGCGCATCAGGCTGcc < 8:99961/148‑1 (MQ=255) cgAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCt < 2:107705/124‑1 (MQ=255) cgAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGACGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCt > 1:107705/1‑124 (MQ=255) gAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCTCACCACATCGCGCATCAGGCTGCCg < 8:210645/148‑1 (MQ=255) aaCAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCTCACCACATCGCGCATCAGGCTGCCggg < 4:74902/149‑1 (MQ=255) cAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCTCACCACATCGCGCATCAGGCTGCCGGGGa < 7:122475/149‑1 (MQ=255) | CGCTGCTGCCGACGAACTGGGCGAAGCTGTATTTGGCCTGGCGGGCGCGCAGTTGCGAGCGGGTCGAGGCCAGTTCCTGCTGCATGCTGGCGTAGCGCTTGAGCAGCGGCGACAGGCTGCGCAGTTCGTCGAACAGCGCAAAGCCAATGGCGCCGATCAGCGCGCCCTGGTCATCGTGGATGGGCAGGCGCATGACCACCAACGGCTCGTTCGGCGTGTCGAGCATGTCCAGCAGGATGGGCCGGCCATTGCTCACCACATCGCGCATCAGGCTGCCGGGGA > NC_002947/3459812‑3460093 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |