Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,475,489 | G→C | 18.4% | H408Q (CAC→CAG) ‡ | PP_3087 ← | excinuclease ABC subunit A |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,475,489 | 0 | G | C | 18.4% | 86.7 / 13.1 | 38 | H408Q (CAC→CAG) ‡ | PP_3087 | excinuclease ABC subunit A |
Reads supporting (aligned to +/- strand): ref base G (25/6); new base C (4/3); total (29/9) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.22e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 |
CCGCCGTGTTCGCCGGCAGCGGGCCCTACATCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGACAAGGTCGGGGTGCTGCGCTCCAGGGCCAGGTAGCCGAGGCCGAGGTC > NC_002947/3475343‑3475635 | ccgccgTGTTCGCCGGCAGCGGGCCCTACATCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGt < 6:382822/148‑1 (MQ=255) tCGCCGGCAGCGGGCCCTACATCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAgccggc > 3:375912/1‑149 (MQ=255) gCCGGCAGCGGGCCCTACATCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAgccggcc < 8:162800/148‑1 (MQ=255) ccGGCAGCGGGCCCTACATCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGa < 5:62313/149‑1 (MQ=255) ccGGCAGCGGGCCCTACATCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGCTTGCACCCGGCCGa < 4:142/149‑1 (MQ=255) tACTTCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCCCTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTa > 7:330339/1‑149 (MQ=255) tACATCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGCTTGCACCCGGCCGAcagtgaa > 8:207139/1‑136 (MQ=255) tACATCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGCTTGCACCCGGCCGAcagtgaa < 7:116358/142‑7 (MQ=255) tACATCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGCTTGCACCCGGCCGAcagtgaa < 7:207139/142‑7 (MQ=255) tACATCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGCTTGCACCCGGCCGAcagtgaa > 8:116358/1‑136 (MQ=255) ccaccaGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTa > 7:205088/1‑148 (MQ=255) accaGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCAGCCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTaaa > 1:263953/1‑149 (MQ=255) accaGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAac > 3:58634/1‑149 (MQ=255) tGGTGTCCAGGTCATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAAtt > 3:161369/1‑148 (MQ=255) tCCAGGTCATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGt < 3:216144/88‑1 (MQ=255) tCCAGGTCATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGt > 4:216144/1‑88 (MQ=255) cATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAAt > 7:314838/1‑135 (MQ=255) tGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCcag > 5:210679/1‑149 (MQ=255) tCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCcaggcg > 5:371236/1‑149 (MQ=255) ca‑ccacGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAg > 7:305395/1‑99 (MQ=255) caacacGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCcaggcg > 4:101771/4‑147 (MQ=255) ccacGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCcaggcgcagg > 7:69576/1‑149 (MQ=255) cGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGt > 3:262524/1‑149 (MQ=255) ccccGTGTGGCCAGCTTTTTTGAGTGGCTGCTGGGCTGCCAACAGGGCTTCAGTGTCGGCGGGGTGCACGCGGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGc < 6:371236/146‑1 (MQ=255) acCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGtt > 5:191556/1‑145 (MQ=255) gTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCAc > 3:102806/1‑149 (MQ=255) ggCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGACAAGGTCggg > 6:251812/1‑149 (MQ=255) cAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGACAAGGTCGGGGtgctgc > 7:116707/1‑149 (MQ=255) gggCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGACAAGGTCGGGGTGCTgcgc > 5:335577/1‑149 (MQ=255) ggCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGACAAGGTCGGGGTGCTGCGCt > 1:189808/1‑149 (MQ=255) ttCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGACAAGGTCGGGGTGCTGCGCTccc > 4:301175/1‑148 (MQ=255) cAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGACAAGGCCGGCGTGCTGCGCTCCAGGGc > 3:232427/1‑147 (MQ=255) ttCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACCGCCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGACAAGGTCGGGGTGCTGCGCTCCAGGGCCAGGTAg > 1:103988/1‑149 (MQ=255) ttCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGc > 3:260198/1‑67 (MQ=255) ccgTCGGCCGGCTTGCACCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGACAAGGTCGGGGTGCTGCGCTCCAGGGCCAGGTAgccgag > 1:275447/3‑149 (MQ=255) gTCGGCCGGCTTGCACCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGACAAGGTc > 8:332453/1‑115 (MQ=255) gCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGACAAGGTCGGGGTGCTGCGCTCCAGGGCCAGGTa > 2:46473/1‑137 (MQ=255) gCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGACAAGGTCGGGGTGCTGCGCTCCAGGGCCAGGTa < 1:46473/137‑1 (MQ=255) gTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGACAAGGTCGGGGTGCTGCGCTCCAGGGCCAGGTAGCCGAGGCCGAGGTc > 4:307753/1‑147 (MQ=255) | CCGCCGTGTTCGCCGGCAGCGGGCCCTACATCCACCAGCCAGTCGGCGCGGCGCATGGTGTCCAGGTCATGCTCCA‑CCACGTACACCGAGTTGCCAGCCTGTTTCAGGCGCTGCAGGGCTTCGAACAGCGCTTCACTGTCGGCCGGGTGCAAGCCGGCCGACGGCTCGTCGAGTACGTAAACCACC‑CCAAACAGCTGCGAATTCAGCTGGGTGGCCAGGCGCAGGCGTTGCAGTTCACCAGAAGACAAGGTCGGGGTGCTGCGCTCCAGGGCCAGGTAGCCGAGGCCGAGGTC > NC_002947/3475343‑3475635 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |