| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,478,006 | A→T | 6.7% | intergenic (‑41/+55) | PP_3088 ← / ← PP_3089 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,478,006 | 0 | A | T | 6.7% | 200.1 / 5.2 | 75 | intergenic (‑41/+55) | PP_3088/PP_3089 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (38/31); new base T (2/3); total (40/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.56e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.90e-02 | |||||||||||
CTCCTTGATCTGATCGAACAAGGCAGAGAAGCTCAAGTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTC > NC_002947/3477858‑3478154 | ctcctTGATCTGATCGAACAAGGCAGAGAAGCTCAAGTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGaaaa > 4:288548/1‑149 (MQ=255) ctTGATCTGATCGAACAAGGCAGAGAAGCTCAAGTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAAccc > 3:230119/1‑149 (MQ=255) tctgatcGAACAAGGCAGAGAAGCTCAAGTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGgcgc > 5:178444/1‑149 (MQ=255) tgatcGAACAAGGCAGAGAAGCTCAAGTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGgcgcgc > 8:309770/1‑149 (MQ=255) atcGAACAAGGCAGAGAAGCTCAAGTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTg > 8:129684/1‑149 (MQ=255) cGAACAAGGCAGAGAAGCTCAAGTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCg > 1:351027/1‑149 (MQ=255) aaCAAGGCAGAGAAGCTCAAGTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACGTGGCTAGTGCGCAGCGCGCCGGCAAACCCGGCGCGCTGCGGa > 4:100329/1‑149 (MQ=255) aCAAGGCAGAGAAGCTCAAGTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGaa > 6:39548/1‑149 (MQ=255) aaGGCAGAGAAGCTCAAGTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAaca > 7:182898/1‑149 (MQ=255) aaGGCAGAGAAGCTCAAGTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAaca > 6:7203/1‑149 (MQ=255) ggCAGAGAAGCTCAAGTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAAcaca < 7:129684/149‑1 (MQ=255) agagAAGCTCAAGTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGgc > 5:234466/1‑149 (MQ=255) gaAGCTCAAGTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGgccgc < 2:253908/149‑1 (MQ=255) tCAAGTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAg > 2:373704/1‑149 (MQ=255) tCAAGTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAg > 4:325733/1‑149 (MQ=255) gTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAgg > 8:220931/1‑136 (MQ=255) gTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAgg < 7:220931/136‑1 (MQ=255) gTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGc < 7:309770/149‑1 (MQ=255) tCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGcc > 4:367610/1‑149 (MQ=255) ccACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTa > 2:145457/1‑149 (MQ=255) ccTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTCGAGGACATGGCTAGTTACAAGCGCGCCGGAAAACCCGGCCCGCTCCGGACACCAGCCCGCCGATGGGGCCCAGGGTTCGGTACGt > 1:303186/1‑149 (MQ=255) ccTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTg > 7:148978/1‑149 (MQ=255) cTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGc < 6:234466/149‑1 (MQ=255) cGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCt > 3:284514/1‑148 (MQ=255) gATAGGGGCGACCAGTGTGGCGAGCGATAGGTCATTTAGAATTTCAGGCATAGAAGACTC‑TGGACTTGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCAGCCGAAGCGGCCCATGGTTCGGTACGTGCTTa < 4:230119/149‑1 (MQ=255) gATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTa < 5:39548/149‑1 (MQ=255) aTAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAg < 1:373704/149‑1 (MQ=255) aGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAgg < 8:182898/148‑1 (MQ=255) ccAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACtt > 8:306895/1‑149 (MQ=255) tgGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAg < 7:42765/107‑1 (MQ=255) tgGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAg > 8:42765/1‑107 (MQ=255) gCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTcgcg < 5:7203/149‑1 (MQ=255) cAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCgcggt > 7:48128/1‑149 (MQ=255) cGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCgcggtgcg < 2:351027/149‑1 (MQ=255) agagGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCgcggtgcggt < 7:306895/149‑1 (MQ=255) agGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTcc < 3:288548/149‑1 (MQ=255) aTTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGc < 3:158885/148‑1 (MQ=255) gagaATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGccacc > 4:368447/1‑149 (MQ=255) agaATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGccacc > 7:121033/1‑148 (MQ=255) tttCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTcg < 3:178219/125‑1 (MQ=255) tttCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGa < 3:367610/149‑1 (MQ=255) tttCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACACACGa > 2:223533/1‑149 (MQ=255) tttCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGAGCTTAGGCAAACACTTTGTTcg > 4:178219/1‑125 (MQ=255) aGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGtt < 6:178444/149‑1 (MQ=255) cATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTgcc > 2:64047/1‑149 (MQ=255) gAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGccgccg > 1:41604/1‑149 (MQ=255) aaCACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCgg > 5:391309/1‑149 (MQ=255) aaCACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCgg > 3:22331/1‑149 (MQ=255) acTC‑TGGACATGGCTAGTGAACAGCGCGCCGTAAAACCGGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCt < 3:368447/149‑1 (MQ=255) tc‑tGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTccc < 8:24720/120‑1 (MQ=255) tc‑tGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTccc > 7:24720/1‑120 (MQ=255) tc‑tGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTgg > 3:252618/1‑149 (MQ=255) tc‑tGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACATTGTTCGCCGTGCGGTCCCAGCCACCCACGATGTTGCCCCCGGCCTgg > 8:22985/1‑149 (MQ=255) cATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCg < 3:325733/149‑1 (MQ=255) aTGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTg < 2:340208/130‑1 (MQ=255) aTGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTg > 1:340208/1‑130 (MQ=255) gCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTg < 8:48128/148‑1 (MQ=255) gCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGc > 4:39262/1‑149 (MQ=255) gCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGc < 2:41604/149‑1 (MQ=255) tgttccgcAGCGCGCCGGGTTTTCCGGCGCGCTGTGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCgg < 5:12016/142‑1 (MQ=38) tAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCgg > 3:336952/1‑149 (MQ=255) tGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGtt < 4:284514/148‑1 (MQ=255) cgcAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGa < 7:178887/113‑1 (MQ=255) cgcAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGa > 8:178887/3‑115 (MQ=255) aaCAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTctg > 5:105786/1‑149 (MQ=255) gcAGCGCGCCGGGTTTTCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTgcc < 5:182334/120‑1 (MQ=255) gcAGCGCGCCGGGTTTTCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTgcc > 6:182334/2‑121 (MQ=255) gcAGCGCGCCGGGTTTTCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCg < 4:345651/141‑1 (MQ=255) gcAGCGCGCCGGGTTTTCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCg > 3:345651/2‑142 (MQ=255) cAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTctgct < 1:145457/149‑1 (MQ=255) gcgcgcCGGAACCCCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTgg < 7:302172/149‑1 (MQ=255) gcgcgcCGGAAAACCCGGGGCGCTGCGTAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCgcggtgcggt < 8:37845/96‑1 (MQ=255) gcgcgcCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTgg < 2:132057/149‑1 (MQ=255) cgcgcCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGAt > 2:38824/1‑111 (MQ=255) cgcgcCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGAt < 1:38824/111‑1 (MQ=255) ggAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAgg < 1:64047/149‑1 (MQ=255) aaaaCCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGc > 5:336419/1‑120 (MQ=255) aaaaCCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGc < 6:336419/120‑1 (MQ=255) aaaaCCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAggtg < 8:121033/149‑1 (MQ=255) aCCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTc < 1:223533/149‑1 (MQ=255) | CTCCTTGATCTGATCGAACAAGGCAGAGAAGCTCAAGTCTTCGCCACTGCCACCCTCGATAGGGGCGACCAGTGTGGCCAGCGAGAGGTCATTGAGAATTTCAGGCATAGAACACTC‑TGGACATGGCTAGTGAACAGCGCGCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTC > NC_002947/3477858‑3478154 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |