Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,525,859 | T→A | 8.5% | L102* (TTG→TAG) ‡ | lexA‑II → | transcriptional repressor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,525,859 | 0 | T | A | 8.5% | 162.5 / 5.8 | 59 | L102* (TTG→TAG) ‡ | lexA‑II | transcriptional repressor |
Reads supporting (aligned to +/- strand): ref base T (30/24); new base A (2/3); total (32/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.52e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.48e-01 |
TTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTG > NC_002947/3525716‑3526005 | ttACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTtgctgc < 7:303168/149‑1 (MQ=255) gATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGCAACTGCTCgtgg < 8:179977/148‑4 (MQ=255) cACGCAAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGca > 7:245332/1‑148 (MQ=255) gCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGt > 1:339893/1‑149 (MQ=255) ccAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGtt < 7:76851/149‑1 (MQ=255) ccAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGGTGCGGCGGGTGCCCCCATCGTCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGtt < 7:71700/149‑1 (MQ=255) cAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTc > 5:17203/1‑149 (MQ=255) aaaCCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTcc < 2:339893/149‑1 (MQ=255) gcgGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGCCCCCAGCCTGTTCCGCCGTAccc > 7:89568/1‑149 (MQ=255) ggCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGa > 4:74907/1‑149 (MQ=255) gtaTACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTccgcc > 2:60271/3‑138 (MQ=255) gtaTACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTccgcc < 1:60271/136‑1 (MQ=255) aTACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTa > 8:263802/1‑149 (MQ=255) tACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTAc < 2:242068/149‑1 (MQ=255) tACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTAc > 5:120769/1‑149 (MQ=255) ccTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACctgc > 1:331016/1‑149 (MQ=255) gCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACctgctg > 4:39685/1‑147 (MQ=255) gCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACctgctg > 4:10967/1‑147 (MQ=255) cGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCgg < 3:10967/149‑1 (MQ=255) cgcCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGc < 6:120769/147‑1 (MQ=255) gccggctgGAAATCCTCGAAATAGCAGAGCTGGGCCAGGTGGCGGCGGGTGGCCCCATCGGCCCGGTCCTGGGCATGCACGAGCAGTTGCTGGTCGACCCCAGCCTGTTGCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGAc < 8:245332/149‑1 (MQ=255) ccggccggAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACt < 4:150947/149‑1 (MQ=255) ccggAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCgat < 6:17203/149‑1 (MQ=255) tCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATcgac < 3:39685/149‑1 (MQ=255) cTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTAc > 6:259477/1‑114 (MQ=255) cTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTAc < 5:259477/114‑1 (MQ=255) cTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATcgacga < 7:263802/149‑1 (MQ=255) tCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCgacgac > 3:268413/1‑149 (MQ=255) tCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGCCCCGCACCTGGGCATCCACCACCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGCCTCCCTGCTCAAGGTGCGGGGCGACACCAGGATCgacgac > 4:293614/1‑149 (MQ=255) aTACCCGTGCGTGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCAt < 3:293614/149‑1 (MQ=255) ccGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCttt > 1:350122/1‑149 (MQ=255) ccGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCttt > 1:209095/1‑149 (MQ=255) ggCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGa < 3:74907/149‑1 (MQ=255) ggCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGa > 7:51930/1‑149 (MQ=255) ccAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGAcc < 2:209095/149‑1 (MQ=255) gcggcgGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCgg > 1:70338/1‑149 (MQ=255) gTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTg < 5:79470/149‑1 (MQ=255) cccccATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGa < 1:208104/124‑1 (MQ=255) cccccATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGa > 2:208104/1‑124 (MQ=255) ccccATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTAcccc > 3:325504/1‑69 (MQ=255) ccccATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTAcccc < 4:325504/69‑1 (MQ=255) ccccATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGCCTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCaa > 5:220203/1‑148 (MQ=255) ccccATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAAc < 2:350122/149‑1 (MQ=255) cccANCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCaa > 5:137945/1‑147 (MQ=255) ccATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAg > 6:296586/1‑149 (MQ=255) gCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGAc < 2:331016/149‑1 (MQ=255) cccGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACg > 1:116490/1‑149 (MQ=255) ccGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGc > 2:134612/1‑149 (MQ=255) ccGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGc > 3:16874/1‑149 (MQ=255) aCCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCcgc > 7:196214/1‑149 (MQ=255) gggCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATc > 3:337351/1‑124 (MQ=255) gggCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATc < 4:337351/124‑1 (MQ=255) cATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGc < 8:196214/149‑1 (MQ=255) gtcGAGCAGCAACTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCg < 7:212731/110‑1 (MQ=255) gtcGAGCAGCAACTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCg > 8:212731/3‑112 (MQ=255) gtcGAGCAGCAACTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCg > 6:141591/3‑112 (MQ=255) gtcGAGCAGCAACTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCg < 5:141591/110‑1 (MQ=255) cAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGACATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGt > 4:49584/1‑149 (MQ=255) gTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTg > 2:189988/1‑149 (MQ=255) gTTGCTGCGCGACCCCAGCCTGTGCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTg < 6:220203/149‑1 (MQ=255) ttGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTg > 7:227279/1‑99 (MQ=255) ttGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTg < 8:227279/99‑1 (MQ=255) | TTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTCCGCCGTACCCCCGACTACCTGCTGAAGGTGCGGGGCGACTCGATGATCGACGACGGCATCTTTGACGGTGACCTGGTCGGCATCCTGCAACAGGCCGACGCCCGCGACGGGCAAATCGTGGTTG > NC_002947/3525716‑3526005 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |