Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,593,761 C→G 8.7% A266G (GCC→GGC)  PP_3171 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,593,7610CG 8.7% 209.2 / 9.5 69A266G (GCC→GGC) PP_3171hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (30/33);  new base G (2/4);  total (32/37)
Fisher's exact test for biased strand distribution p-value = 6.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.16e-01

GTTCGCCGCTGCCAGCGATGCTGAGGCGGACTACCTGGCCAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATCGACTGCCGCATCCATGACCCGCTGGCGCGGCAGCG  >  NC_002947/3593618‑3593902
                                                                                                                                               |                                                                                                                                             
gTTCGCCGCTGCCAGCGATGCTGAGGCGGACTACCTGGCCAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCACGgcgcgc                                                                                                                                          >  5:382582/1‑149 (MQ=255)
 ttCGCCGCTGCCAGCGATGCTGAGGCGGACTACCTGGCCAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGc                                                                                                                                          <  5:386098/148‑1 (MQ=255)
 ttCGCCGCTGCCAGCGATGCTGAGGCGGACTACCTGGCCAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCt                                                                                                                                         <  7:302821/149‑1 (MQ=255)
 ttCGCCGCTGCCAGCGATGCTGAGGCGGACTACCTGGCCAGCTCCCAACGCAAGTTGATGCAGGACCGGGAAGGGGGGCGGGTTGGGTTTCAGCCCAAGCCGCAAGAGGGGTTCCTGGAACGGGTGCCGGACCACGCGCGCGCCGTGCt                                                                                                                                         >  1:83041/1‑149 (MQ=255)
   cgccgcTGCCAGCGATGCTGAGGCGGACTACCTGGCCAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTc                                                                                                                                        >  4:364710/1‑148 (MQ=255)
   cgccgcTGCCAGCGATGCTGAGGCGGACTACCTGGCCAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTc                                                                                                                                        <  6:259526/148‑1 (MQ=255)
    gccgcTGCCAGCGATGCTGAGGCGGACTACCTGGCCAGCTCCCACCGTAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCACGGCGCGCTCgt                                                                                                                                      <  8:220520/149‑2 (MQ=255)
    gccgcTGCCAGCGATGCTGAGGCGGACTACCTGGCCAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCACGGCGCGCTCgt                                                                                                                                      <  6:382582/149‑2 (MQ=255)
    gccgcTGCCAGCGATGCTGAGGCGGACTACCTGGCCAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCACGGCGCGCTCg                                                                                                                                       <  5:243158/148‑1 (MQ=255)
      cgcTGCCAGCGATGCTGAGGCGGACTACCTGGCCAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGcc                                                                                                                                              <  4:288090/139‑1 (MQ=255)
      cgcTGCCAGCGATGCTGAGGCGGACTACCTGGCCAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGcc                                                                                                                                              >  3:288090/1‑139 (MQ=255)
          gCCAGCGATGCTGAGGCGGACTACCTGGCCAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCACGGCGCGCTCgtggtccg                                                                                                                                <  5:255844/149‑8 (MQ=255)
               cGATGCTGAGGCGGACTACCTGGCCAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATgg                                                                                                                           >  1:14437/1‑149 (MQ=255)
                     tGAGGCGGACTACCTGGCCAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCt                                                                                                                     >  4:226901/1‑149 (MQ=255)
                                 ccTGGCCAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCgg                                                                                                           <  2:14437/147‑1 (MQ=255)
                                  cTGGCCAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAgg                                                                                                        >  6:24264/1‑149 (MQ=255)
                                       cAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGccc                                                                                                    >  7:297344/1‑148 (MQ=255)
                                       cAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGccc                                                                                                    >  3:72523/1‑148 (MQ=255)
                                           tCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCGAAGCCGCAAGAGGGTTACCTCGAACGCTTGACGGACCAAGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTCGCCGGAGGGCCCGaagg                                                                                               >  3:235385/1‑147 (MQ=255)
                                           tCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACg                                                                                               >  3:184422/1‑149 (MQ=255)
                                                ccGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCGCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGa                                                                                          <  5:225799/149‑1 (MQ=255)
                                                 cGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAg                                                                                         >  5:189896/1‑149 (MQ=255)
                                                     aGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGaa                                                                                     <  4:291842/149‑1 (MQ=255)
                                                      gTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAg                                                                                    <  5:208897/149‑1 (MQ=255)
                                                            gCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGt                                                                                            <  3:30107/135‑1 (MQ=255)
                                                            gCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGt                                                                                            >  4:30107/1‑135 (MQ=255)
                                                               ggACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGcgct                                                                           >  8:305040/1‑149 (MQ=255)
                                                                  ccTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGcgctcgc                                                                        <  2:42301/149‑1 (MQ=255)
                                                                  ccTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGcgctcgc                                                                        <  4:184422/149‑1 (MQ=255)
                                                                   cTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGcgctcgct                                                                       >  5:25721/1‑149 (MQ=255)
                                                                     gCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCg                                                                                                   <  4:296827/119‑1 (MQ=255)
                                                                     gCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCg                                                                                                   >  3:296827/1‑119 (MQ=255)
                                                                     gCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAggg                                                                                       <  4:256605/131‑1 (MQ=255)
                                                                     gCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAggg                                                                                       >  3:256605/1‑131 (MQ=255)
                                                                     gCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGa                                                                     >  7:310057/1‑149 (MQ=255)
                                                                     gCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGa                                                                     >  6:129778/1‑149 (MQ=255)
                                                                      cATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGAt                                                                    <  3:226901/149‑1 (MQ=255)
                                                                       aTGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATc                                                                   <  5:166420/149‑1 (MQ=255)
                                                                        tGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCg                                                                  <  5:24264/149‑1 (MQ=255)
                                                                          tCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGa                                                                 <  4:72523/148‑1 (MQ=255)
                                                                          tCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGa                                                                 <  4:197941/148‑1 (MQ=255)
                                                                              gcgcTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGa                                                            >  2:323716/1‑149 (MQ=255)
                                                                                gcTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACGTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGAcc                                                          >  1:38125/1‑149 (MQ=255)
                                                                                           ctgcCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGGCTGCTCCGTAGCCGGTGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGa                                               <  8:310057/149‑1 (MQ=255)
                                                                                           ctgcCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGa                                               <  6:189896/149‑1 (MQ=255)
                                                                                            tgcCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAg                                              >  5:281633/1‑149 (MQ=255)
                                                                                             gcCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGc                                             >  8:99585/1‑149 (MQ=255)
                                                                                               ccAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCtg                                           <  7:305040/149‑1 (MQ=255)
                                                                                                cAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGCGCAGACCGGGGCGGACGAGCtga                                          >  2:284048/1‑149 (MQ=255)
                                                                                                    ccGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTgatgat                                      <  5:129778/149‑1 (MQ=255)
                                                                                                    caggaaGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTgatgat                                      <  1:325429/145‑1 (MQ=255)
                                                                                                     cGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATc                                     >  3:280477/1‑149 (MQ=255)
                                                                                                                   cTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATCGACTGCCGCATCCa                       >  4:200829/1‑149 (MQ=255)
                                                                                                                   cTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATCGACTGCCGCATCCa                       >  3:341285/1‑149 (MQ=255)
                                                                                                                      gAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATCGACTGCCGCATCCATGa                    <  2:38125/149‑1 (MQ=255)
                                                                                                                      gAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATCGACTGCCGCATCCATGa                    >  6:259355/1‑149 (MQ=255)
                                                                                                                      gAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGAGCGACTGCCGCATCCAt                      <  3:364710/147‑1 (MQ=255)
                                                                                                                            ttGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATCGACTGCCGCATCCATGa                    >  5:386316/1‑143 (MQ=255)
                                                                                                                            ttGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATCGACTGCCGCATCCATGa                    <  6:386316/143‑1 (MQ=255)
                                                                                                                              gCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATCGACTGCCGCATCCATGACCCGCTg             <  2:83041/148‑1 (MQ=255)
                                                                                                                                  ctgatcGAGCACGGCGCGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATCGACTGCCGCATCCATGACCCGCTGGcgcg        >  3:4062/6‑149 (MQ=255)
                                                                                                                                   tgatcGAGCACGGCGCGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATCGACTGCCGCATCCATGACCCGCTGGCGCgg       >  5:319500/5‑149 (MQ=255)
                                                                                                                                   aCCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATCGACTGCCGCATCCATGACCCGCTGGCGCgg       <  7:99585/149‑1 (MQ=255)
                                                                                                                                   aCCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATCGACTGCCGCATCCATGACCCGCTGGCGCgg       <  4:280477/149‑1 (MQ=255)
                                                                                                                                   aCCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATCGACTGCCGCATCCATGACCCGCTGGCGCgg       <  4:341285/149‑1 (MQ=255)
                                                                                                                                      aCGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCtga                                          <  7:165088/111‑1 (MQ=255)
                                                                                                                                      aCGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCtga                                          >  8:165088/1‑111 (MQ=255)
                                                                                                                                       cGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATCGACTGcc                              >  7:280119/1‑122 (MQ=255)
                                                                                                                                       cGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATCGACTGcc                              <  8:280119/122‑1 (MQ=255)
                                                                                                                                        gAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATCGACTGCCGCATCCATGACCCGCTGGCGCGGCAGCg  <  5:259355/149‑1 (MQ=255)
                                                                                                                                         aGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAg                                                                                                         <  6:337729/45‑1 (MQ=255)
                                                                                                                                         aGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAg                                                                                                         >  5:337729/1‑45 (MQ=255)
                                                                                                                                               |                                                                                                                                             
GTTCGCCGCTGCCAGCGATGCTGAGGCGGACTACCTGGCCAGCTCCCACCGCAAGTGGATGCTGGACCTGCATGTCGGGCGCTTTGGCTTGCTGCCCAAGCCGCAAGAGGGTTACCTCGAACGCTTGCCGGACCACGAGCGCGCCGTGCTCGATCAGGTGATGGCCTGCTCCGTAGCCGGAGGGCCCGAACGGGTGAGGGAAGGGCTGCGCTCGCTGATCGAGCAGACCGGGGCGGACGAGCTGATGATCGACTGCCGCATCCATGACCCGCTGGCGCGGCAGCG  >  NC_002947/3593618‑3593902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑