| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,642,334 | C→T | 7.3% | G291S (GGC→AGC) | PP_3209 ← | isoxanthopterin deaminase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,642,334 | 0 | C | T | 7.3% | 159.2 / 2.7 | 55 | G291S (GGC→AGC) | PP_3209 | isoxanthopterin deaminase |
| Reads supporting (aligned to +/- strand): ref base C (23/28); new base T (2/2); total (25/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.94e-01 | |||||||||||
CGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGATCATGGACTTCGTTCTGGTACTCCACGGT > NC_002947/3642190‑3642481 | cGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGccggtgccggtg > 2:196448/1‑149 (MQ=255)cGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCAATCAACGCCGATCGAGACCGACATGCCTGCGGCCTACATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGCTGacgttgacggtg > 6:294903/1‑149 (MQ=255) gCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGccggtgccggtg < 3:144285/148‑1 (MQ=255) gCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTgg > 1:317598/1‑149 (MQ=255) gCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTgg < 2:218131/149‑1 (MQ=255) gCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTgg < 2:223748/149‑1 (MQ=255) cTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGgc < 6:25757/149‑1 (MQ=255) aTCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCTGGTGGCGcc > 5:58349/1‑149 (MQ=255) aTCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCTGGTGGCGcc > 1:217704/1‑149 (MQ=255) cATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACAGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGcc < 8:193808/147‑1 (MQ=255) cATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACAGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGcc > 7:193808/1‑147 (MQ=255) aTGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCca < 6:114250/148‑1 (MQ=255) gTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCcag > 4:48487/1‑147 (MQ=255) cAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTg < 3:95643/149‑1 (MQ=255) gTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATttctt < 1:161444/149‑1 (MQ=255) gTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATttctt < 6:69033/149‑1 (MQ=255) gAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCgg < 1:196448/148‑1 (MQ=255) cAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTc < 3:283153/149‑1 (MQ=255) cATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCt < 8:117171/126‑1 (MQ=255) cATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCt > 7:117171/1‑126 (MQ=255) aTCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGa > 5:64719/1‑149 (MQ=255) cACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGAc > 5:79130/1‑147 (MQ=255) cACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGAc > 5:84567/1‑147 (MQ=255) ccGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTg < 2:322164/149‑1 (MQ=255) aTCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTgcgc < 6:212657/149‑1 (MQ=255) agaCCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAAc < 2:317598/149‑1 (MQ=255) ccGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCTGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACcac < 2:217704/149‑1 (MQ=255) ccGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCTGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACcac < 6:58349/149‑1 (MQ=255) cGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCa < 6:68240/125‑1 (MQ=255) cATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGgc < 6:259390/93‑1 (MQ=255) cATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGgc > 5:259390/1‑93 (MQ=255) tGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGcc > 8:30812/1‑149 (MQ=255) gCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATttct > 5:374720/1‑102 (MQ=255) gCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATttct > 5:379950/1‑102 (MQ=255) gCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATttct < 6:379950/102‑1 (MQ=255) gCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTAGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATttct < 6:374720/102‑1 (MQ=255) aTGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATGTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTc > 4:301703/1‑149 (MQ=255) ggCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGgcg < 2:174743/76‑1 (MQ=255) ggCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGgcg > 1:174743/1‑76 (MQ=255) gCAACGATATCTGCGATACAACTGCCAAGCCGGCCATTGCTTTGTGGTAAGTGGGCGATGCAGTTGCCTGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCATCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTg < 5:294903/149‑1 (MQ=255) tatCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCcgcg < 7:30812/149‑1 (MQ=255) tatCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCcgcg < 4:275526/149‑1 (MQ=255) tGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAg > 7:219427/1‑148 (MQ=255) tGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAg > 5:7497/1‑148 (MQ=255) cGATCCCACTGCCACGCCGGCCATTGCTTTGAGGGCAGTGGGCGATGCCTGTGCCGTTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAg < 8:260196/146‑1 (MQ=255) cAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGaa > 4:189930/1‑97 (MQ=255) cAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGaa < 3:189930/97‑1 (MQ=255) cAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGc > 5:381638/1‑146 (MQ=255) cAAGCCGGCCATTGAGTTGTTGGAAGTGGGCGATGCAGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGGTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCga < 6:381638/148‑1 (MQ=255) aGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGagag < 3:48487/149‑1 (MQ=255) cATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTgg > 2:275173/1‑149 (MQ=255) cTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGAt > 4:52784/1‑148 (MQ=255) ttGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGATCAt > 6:39458/1‑149 (MQ=255) ggCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGATCATGGAc < 1:275173/148‑1 (MQ=255) ggCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGATCATGGACt > 2:179890/1‑149 (MQ=255) gCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGATCATGGACtt > 2:309723/1‑149 (MQ=255) aGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGATCATGGACTTCg < 1:148164/149‑1 (MQ=255) tGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGATCATGGACTTCGtt > 3:249191/1‑149 (MQ=255) tgccggtgccggTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGATCATGGACTTCGTTCTg < 3:73082/145‑1 (MQ=255) tgccggtgccggTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGATCATGGACTTCGTTCTg > 4:73082/1‑145 (MQ=255) tgccggtgGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCgaga < 5:358299/111‑1 (MQ=255) tgccggtgGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCgaga > 6:358299/1‑111 (MQ=255) ccggtgGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGATCATGGACTTCGTTCTGGTACTCCACGGt > 8:167466/1‑149 (MQ=255) | CGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGATCATGGACTTCGTTCTGGTACTCCACGGT > NC_002947/3642190‑3642481 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |