Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,773,922 | A→T | 7.9% | T209S (ACA→TCA) | PP_5743 → | TonB‑dependent receptor protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,773,922 | 0 | A | T | 7.9% | 174.0 / 2.1 | 59 | T209S (ACA→TCA) | PP_5743 | TonB‑dependent receptor protein |
Reads supporting (aligned to +/- strand): ref base A (27/27); new base T (3/2); total (30/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTGACGCCCAAGGTTGCCGAGCAGGGCGACAACCACCATGGGGAGCTGCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGTCCAGCAACTGTTGCTGCACTTCGCTCTCGGCCTTTTCTA > NC_002947/3773775‑3774070 | cTGACGCCCAAGGTTGCCGAGCAGGGCGACAACCACCATGGGGAGCTGCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGAc < 6:95209/149‑1 (MQ=255) tGACGCCCAAGGTTGCCGAGCAGGGCGACAACCACCATCGGGAGCTGCAACTCACCGGCCCCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGCCCGCGAAGGCGATTTCGACTACAACACACCCAGGCACGTGCCCATGACa > 7:232031/1‑149 (MQ=255) aggCCCAAGGTTGCCGAGCAGGGCGTCAACCACCATGGGGAGCTGCTACTCACCGGCGGCAGGTTGCGCACGGCCACCGAACAAGGCAGCCTGATTGGCCGCGAAGGCGATTTCGAGTAGCACACTCCCAGGCACGTGCCCATGACATg < 8:232031/147‑1 (MQ=255) gCCCAAGGTTGCCGAGCAGGGCGACAACCACCATGGGGAGCTGCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGTCATggg > 6:46828/1‑149 (MQ=255) aaGGTTGCCGAGCAGGGCGACAACCACCATGGGGAGCTGCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTc < 2:224854/149‑1 (MQ=255) aaGGTTGCCGAGCAGGGCGACAACCACCATGGGGAGCTGCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTc > 6:22110/1‑149 (MQ=255) ggTTGCCGAGCAGGGCGACAACCACCATGGGGAGCTGCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGTCATGGGcacgtg < 5:46828/149‑6 (MQ=255) ccGAGCAGGGCGACAACCACCATGGGGAGCTGCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCTAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATAc > 1:295933/1‑149 (MQ=255) ccGAGCAGGGCGACAACCACCATGGGGAGCTGCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATAc < 1:279896/149‑1 (MQ=255) cAACCACCATGGGGAGCTGCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCt > 4:360564/1‑149 (MQ=255) cAACCACCATGGGGAGCTGCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCt < 3:270093/149‑1 (MQ=255) accaccATGGGGAGCTGCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTgg > 6:258420/1‑149 (MQ=255) ccaccaTGGGGAGCTGCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGgt < 7:269545/149‑1 (MQ=255) ggggAGCTGCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACgg > 3:110629/1‑149 (MQ=255) gggAGCTGCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGCACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGt > 1:265535/1‑149 (MQ=255) cTGCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTc < 4:303437/149‑1 (MQ=255) tccAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGAATGGCCGCGAAGGCGAATTCGACTACAACCCACCCCGGCACGTGCCCATGACATGGGCGTCTACATACTGCCACCGTTTCTGGTGTAAAGGTCTGTCg > 4:2211/3‑149 (MQ=255) gCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTg > 3:121737/1‑145 (MQ=255) gCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTg < 4:121737/145‑1 (MQ=255) cAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCg > 5:131156/1‑147 (MQ=255) cAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCg > 4:114714/1‑147 (MQ=255) aaCTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAg < 2:295933/149‑1 (MQ=255) tCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCt > 3:260935/1‑149 (MQ=255) aCCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTgc > 4:223235/1‑149 (MQ=255) cAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGttt < 5:45305/114‑1 (MQ=255) cAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGttt > 6:45305/1‑114 (MQ=255) aGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTaa > 6:43370/1‑149 (MQ=255) ccGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGgt > 5:104522/1‑113 (MQ=255) ccGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGgt < 6:104522/113‑1 (MQ=255) ccGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATgg < 3:82154/147‑1 (MQ=255) cGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCtt < 6:131156/149‑1 (MQ=255) cACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGc < 2:265535/149‑1 (MQ=255) agccagccTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTgg < 3:360564/149‑1 (MQ=255) gccagccTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGa > 3:147060/1‑149 (MQ=255) cagccTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACt < 4:260935/149‑1 (MQ=255) agccTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACtt < 5:43370/149‑1 (MQ=255) ccTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTAc < 5:22110/149‑1 (MQ=255) ccTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTAc < 5:258420/149‑1 (MQ=255) ccGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTcgcg > 8:284293/1‑149 (MQ=255) ggCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGt > 5:241153/1‑149 (MQ=255) gCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGTc < 1:153227/149‑1 (MQ=255) gCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGTc < 4:110629/149‑1 (MQ=255) cGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGACTGCATAATGACACGGTTTCTGGTGTAACGGACTGTCGCAGCCTGAGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGTc > 5:321626/1‑148 (MQ=255) ccACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCCCGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGTCCAGCAACTGTtgc > 2:357661/1‑149 (MQ=255) ccACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGTCCAGCAACTGTtgc > 2:305925/1‑149 (MQ=255) ccACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGTCCAGCAACTGTtgc > 7:108889/1‑149 (MQ=255) ccACACACCCAGGCACGTGCCCATGACATGGGCGGCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCATGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGTCCAGCAACTGTtg < 3:2211/148‑1 (MQ=255) cacacaCCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTg > 4:63740/1‑111 (MQ=255) cacacaCCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTg < 3:63740/111‑1 (MQ=255) acacacCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGTCCAGCAACTGTtgctg < 6:241153/149‑1 (MQ=255) acacCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGTCCAGCAACTGTTGCTGCa > 7:200155/1‑149 (MQ=255) ccAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAgg < 4:323508/126‑1 (MQ=255) ccAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAgg > 3:323508/1‑126 (MQ=255) ccAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGTCCAGCAACTGTTGCTGCACTTc < 8:108889/149‑1 (MQ=255) cACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGTCCAGCAACTGTTGCTGCACTTCGctct < 4:147060/149‑1 (MQ=255) agacgCCCATGTCATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGTCCAGCAACTGTTGCTGCACTTCGCtctc > 6:21303/5‑149 (MQ=255) agTGCCCATGTCATGGGCGTCTGCATACTGCGACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTTCGCGGCTTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGTTCGCGTGCAGGTGCAGCAACTGTTGCTGCACTTCGCTCTCg < 6:321626/148‑1 (MQ=255) acgCCCATGTCATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGTCCAGCAACTGTTGCTGCACTTCGCTCTCgg > 7:106720/3‑149 (MQ=255) ccATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGTCCAGCAACTGTTGCTGCACTTCGCTCTCGGCCtt > 8:270186/1‑149 (MQ=255) aCATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGTCCAGCAACTGTTGCTGCACTTCGCTCTCGGCCTTTTCTa < 3:223235/149‑1 (MQ=255) | CTGACGCCCAAGGTTGCCGAGCAGGGCGACAACCACCATGGGGAGCTGCAACTCACCGGCGGCAGCTTCCGCACGGCCACCGAACAAGCCAGCCTGATTGGCCGCGAAGGCGATTTCGACTACCACACACCCAGGCACGTGCCCATGACATGGGCGTCTGCATACTGCCACGGTTTCTGGTGTAACGGTCTGTCGCAGCCTGCGCGGCGTAATGGCTTAGCAGTGCAGATCGTGGACTTACCCGGTCGCGGGCAGGTCCAGCAACTGTTGCTGCACTTCGCTCTCGGCCTTTTCTA > NC_002947/3773775‑3774070 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |