| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,097,594 | C→G | 7.1% | G28R (GGG→CGG) | PP_3605 ← | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,097,594 | 0 | C | G | 7.1% | 264.0 / 8.0 | 84 | G28R (GGG→CGG) | PP_3605 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (39/39); new base G (2/4); total (41/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.16e-01 | |||||||||||
GCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGTCAGCACCAGCGCGCCCTC > NC_002947/4097446‑4097741 | gCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGAGTACTGCGCTCCACCACGCGAATGCCCAGCCGCGTCTCTA‑AAGCAATCAGGCGT‑TTCGACAGCAACGGAGGGAGGCTCTCCAGTTGCCGccc > 1:184734/1‑149 (MQ=255) tCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCcggc > 7:127837/1‑149 (MQ=255) gagaACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCcggcgg > 8:203317/1‑149 (MQ=255) agaACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCcggcgg > 6:253269/1‑148 (MQ=255) gaACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGgca < 6:121575/149‑1 (MQ=255) aaCCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGgcag < 5:253269/149‑1 (MQ=255) aCCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCGGGCGgcaac < 5:373634/149‑3 (MQ=255) ggCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCGGGCGgcaactgga < 4:142587/148‑7 (MQ=255) tACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGc > 4:123001/1‑149 (MQ=255) cAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTT‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTCCCGCCCGGCGGCAGCAAACGAGCCCt > 4:199299/1‑149 (MQ=255) cGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCt > 1:14404/1‑148 (MQ=255) cTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCa > 3:329056/1‑148 (MQ=255) cTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCAt < 2:319626/149‑1 (MQ=255) tCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCcg < 1:152568/123‑1 (MQ=255) tCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCcg > 2:152568/1‑123 (MQ=255) gCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTGCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATAc > 6:3088/1‑148 (MQ=255) gCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATAc < 8:193470/148‑1 (MQ=255) ccTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGTCCTGCTCATACAAg < 8:127837/149‑1 (MQ=255) ccTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAg > 7:243203/1‑149 (MQ=255) ccTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAg < 8:243203/149‑1 (MQ=255) aTCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGc < 2:360917/147‑1 (MQ=255) aaGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAggg < 3:123001/148‑1 (MQ=255) aGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAg < 5:334723/137‑1 (MQ=255) aGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAg > 6:334723/1‑137 (MQ=255) cgcAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTACCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAATGCCAGCAGGGTgg > 8:245862/1‑148 (MQ=255) cagcagCCGCGTACTGCGGTCCACCAGGAGTATGCCGAGCGGCGTCTCTA‑AAGCACTGACGCGG‑TTAGATAGGTGCGTATGGTGGCGGTCCAGTTGCCGCCCTGCGGCAGGAAACGTGCCCTTCTGATACAAGGCCAGCAGGGTGGCaa < 2:184734/149‑1 (MQ=255) cAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCaa < 2:14404/149‑1 (MQ=255) cTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGtt > 3:29431/1‑149 (MQ=255) tGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGTAGGCGCCCCCCCCGTAGGGGGGGGGTCCATTTGCCCCCCGGGGGCAGCAACCGCGCCCTGGGCATTCAAGGCCAGCAGGGGGGCAAGtt > 1:108426/1‑149 (MQ=255) ccGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTtcat < 2:187392/149‑1 (MQ=255) gcgTACTGCGCTCCACCAGGCGAATGCCGAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCGGGCGgcaac > 1:213727/1‑101 (MQ=255) gcgTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCGGGCGgcaac < 2:213727/103‑3 (MQ=255) gTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAgc < 3:329499/149‑1 (MQ=255) tGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTATAAGCACTCAGGCGT‑TTCGACAGCACCGAAGGGTGGCGCTCCAGTTGCCGCCCGCCGCCAGCAAACGAGCCCTGATCATACaa > 1:62821/1‑119 (MQ=255) tGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCt < 7:213981/111‑1 (MQ=255) tGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCt > 8:213981/1‑111 (MQ=255) tGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCAt < 2:87014/114‑1 (MQ=255) tGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCAt > 1:87014/1‑114 (MQ=255) tGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACaa < 2:62821/118‑1 (MQ=255) cgcTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGc > 3:182960/1‑103 (MQ=255) cgcTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGc < 4:182960/103‑1 (MQ=255) cgcTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGcga < 4:361822/147‑1 (MQ=255) cTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCgacgac > 5:312387/1‑149 (MQ=255) cTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGAGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCgacgac > 7:200118/1‑149 (MQ=255) caccaGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAgg < 2:163977/121‑1 (MQ=255) caccaGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAgg > 1:163977/1‑121 (MQ=255) aGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCg > 1:140355/1‑147 (MQ=255) aGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGaa < 2:140355/149‑1 (MQ=255) ggCGAATGCCCAGCCGCGTCTCTT‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAg < 3:199299/149‑1 (MQ=255) ggCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAg > 1:380453/1‑92 (MQ=255) ggCGAATGCACATCCGCGTCTCTA‑AAGCACTGACGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCTGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGAAAGTTCATCAGCGCGACGACTGTCGAAg < 3:199444/149‑1 (MQ=255) cccAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACTGCACCGTAGGGTGGCGCTCCAGTTGCCGCGCGGCGGCAGCAAACGTGCCCTGGTCATACAAGGCCAGCAGGTTGGCAAg < 5:269185/116‑1 (MQ=255) cccAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCa < 6:312387/148‑1 (MQ=255) cccAGACGCGTCTCTA‑AAGCACTAAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGACGACCCGCGGCAGCAAACGAGCCCTACTCATACAAGGCCAGCAGGGTGGCAAg > 6:269185/1‑116 (MQ=255) ccAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATg < 7:203317/149‑1 (MQ=255) ccAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATg > 8:75615/1‑149 (MQ=255) ccAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATg < 5:64178/149‑1 (MQ=255) ccGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTACCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCaa < 7:245862/149‑1 (MQ=255) gTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAggct > 5:351392/1‑149 (MQ=255) ctA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCa < 2:192553/135‑1 (MQ=255) ctA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCa > 1:192553/1‑135 (MQ=255) tA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCTATgg < 5:250238/137‑1 (MQ=255) tA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGAGCGACGACTGTCGAAGGTATCTATgg > 6:250238/1‑137 (MQ=255) cACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGTCAGCAAACGATCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAggg < 4:329056/149‑1 (MQ=255) cACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTtca > 5:357658/1‑101 (MQ=255) cACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTtca < 6:357658/101‑1 (MQ=255) cACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATcc < 6:158703/128‑1 (MQ=255) cACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATcc > 5:158703/1‑128 (MQ=255) cACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAggg < 7:75615/149‑1 (MQ=255) tCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAg > 6:259050/1‑149 (MQ=255) tCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAg > 3:344876/1‑149 (MQ=255) cAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGt > 1:211434/1‑149 (MQ=255) gCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATcc > 5:153871/1‑121 (MQ=255) gCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATcc < 6:153871/121‑1 (MQ=255) gT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAAt > 8:208772/1‑149 (MQ=255) cGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAgg > 3:50059/1‑149 (MQ=255) gACAGCACCGGAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAggg > 8:103142/1‑149 (MQ=255) gCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCg < 7:103142/149‑1 (MQ=255) cGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGAt > 5:263389/1‑148 (MQ=255) cGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGAt > 5:51392/1‑148 (MQ=255) tAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAg < 4:29431/149‑1 (MQ=255) tAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAg < 7:208772/149‑1 (MQ=255) gTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAg > 7:280735/1‑149 (MQ=255) gcgcTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGt > 6:188334/1‑147 (MQ=255) gcTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGTCAGc > 3:275364/1‑149 (MQ=255) cTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGTCAGCa < 1:166489/149‑1 (MQ=255) gctGCCGCCGGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAgcgc < 2:341295/67‑1 (MQ=255) gctGCCGCCGGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAgcgc > 1:341295/3‑69 (MQ=255) ccgccCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGTc > 7:248051/1‑136 (MQ=255) ccgccCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGTc < 8:248051/136‑1 (MQ=255) ccGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGTCAGCACCAGCGCGCCCTc < 6:351392/149‑1 (MQ=255) | GCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTA‑AAGCACTCAGGCGT‑TTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGTCAGCACCAGCGCGCCCTC > NC_002947/4097446‑4097741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |