| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,289,437 | C→A | 7.8% | L1050L (CTG→CTT) | PP_3761 ← | two‑component system sensor histidine kinase/response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,289,437 | 0 | C | A | 7.8% | 243.7 / 7.8 | 77 | L1050L (CTG→CTT) | PP_3761 | two‑component system sensor histidine kinase/response regulator |
| Reads supporting (aligned to +/- strand): ref base C (38/33); new base A (3/3); total (41/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 | |||||||||||
GCGGATCAGGCGGGTGGCCTCGAAGCCGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTGCGATTCGACCTTGTGCAGGAAC > NC_002947/4289293‑4289584 | gCGGATCAGGCGGGTGGCCTCGAAGCCGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAggg < 7:357637/149‑1 (MQ=255) gATCAGGCGGGTGGCCTCGAAGCCGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGgcgc < 3:175570/149‑1 (MQ=255) aTCAGGCGGGTGGCCTCGAAGCCGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGACATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCa < 6:64531/142‑1 (MQ=255) aTCAGGCGGGTGGCCTCGAAGCCGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGACATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCa > 5:64531/1‑142 (MQ=255) ggCGGGTGGCCTCGAAGCCGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGt > 8:216071/1‑148 (MQ=255) cGGGTGGCCTCGAAGCCGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAg < 5:371413/149‑1 (MQ=255) gggTGGCCTCGAAGCCGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAgg < 2:192016/149‑1 (MQ=255) ggTGGCCTCGAAGCCGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAggg < 7:176545/149‑1 (MQ=255) gTGGCCTCGAAGCCGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAggg > 2:118043/1‑148 (MQ=255) gCCTCGAAGCCGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCa > 4:296982/1‑147 (MQ=255) ccTCGAAGCCGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAg < 5:248672/149‑1 (MQ=255) cGAAGCCGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGata > 2:355197/1‑149 (MQ=255) aGCCGTCCATCTCCGGCATCATCACGTCCATCAGCACCATGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCGTACCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATAtt < 1:103536/149‑1 (MQ=255) gCCGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTAc > 7:173064/1‑149 (MQ=255) ccGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACg < 1:355197/149‑1 (MQ=255) ccGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACg < 3:318980/149‑1 (MQ=255) cGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGc < 4:196163/149‑1 (MQ=255) ccGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTACAGGCGCTCTATGGCTTCGCGCCCGTTGCG‑GCCGATTGCGAAAATTCCCCCCGTGTGCTGCAGAGCGCGGGTCAGGGAAAAGCTATTACGCACAacgtcg > 8:307048/1‑149 (MQ=255) cGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATcgtcgt > 7:31834/1‑149 (MQ=255) atcatcACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTccac < 3:296982/149‑1 (MQ=255) atcatcACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCACGGCAAAGATATTACGCACATCGTCGTccac < 1:32398/149‑1 (MQ=255) atcaCGTCCATCCGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCTTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACcag < 8:173064/149‑1 (MQ=255) tcaCGTCCATCAGCACCAGGTCAATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTGGAGCACAAGGgcgccattg > 6:238818/1‑108 (MQ=255) tcaCGTCCATCAGCACCAGGTCAATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTGGAGCACAAGGgcgccattg < 5:238818/113‑6 (MQ=255) caCGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACcagca > 2:328111/1‑149 (MQ=255) aCGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTgg < 3:123826/109‑1 (MQ=255) aCGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTgg > 4:123826/1‑109 (MQ=255) cGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACcagcag > 1:58874/1‑148 (MQ=255) cAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACAt > 6:190966/1‑125 (MQ=255) cAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACAt < 5:190966/125‑1 (MQ=255) cAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCt < 2:58874/149‑1 (MQ=255) cAGGTCGATATAGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTAAGAACATCGTAGTCCACCAGCAGCACCTTGCGGCCCt > 4:157172/1‑149 (MQ=255) tCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGaa < 6:374700/149‑1 (MQ=255) atatCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTccacc < 6:18752/123‑1 (MQ=255) atatCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTccacc > 5:18752/1‑123 (MQ=255) cgtcgtGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTc > 5:182790/1‑139 (MQ=255) cgtcgtGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGGCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTc < 6:182790/139‑1 (MQ=255) tcgtGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTc > 7:311377/1‑149 (MQ=255) gctgctCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCgg > 7:210076/1‑149 (MQ=255) ctCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCACTCGaa > 2:325756/1‑132 (MQ=255) cAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTgcgcg > 3:68501/1‑149 (MQ=255) ggCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGcgcgcg < 6:374749/149‑1 (MQ=255) ggCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGcgcgcg > 3:202571/1‑149 (MQ=255) cgcTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGt > 4:32789/1‑149 (MQ=255) tCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACAcc > 5:155291/1‑126 (MQ=255) tCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACAcc < 6:155291/126‑1 (MQ=255) gATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCtt > 3:266674/1‑147 (MQ=255) gCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCAt < 1:328111/149‑1 (MQ=255) cTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCGCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATg > 7:132423/1‑149 (MQ=255) cTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATg > 5:281275/1‑149 (MQ=255) gcgcCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTgc < 1:194825/128‑1 (MQ=255) gcgcCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTgc > 2:194825/1‑128 (MQ=255) gcgcCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCg < 7:309215/147‑1 (MQ=255) gcgcCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCg > 8:309215/1‑147 (MQ=255) cccGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGAc < 4:202571/149‑1 (MQ=255) cccGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATACGTTGAc > 1:11812/1‑149 (MQ=255) gCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCg < 4:57058/93‑1 (MQ=255) gCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCg > 3:57058/1‑93 (MQ=255) gCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTg > 2:314346/1‑148 (MQ=255) cGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTg < 4:266674/148‑1 (MQ=255) cGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTGc > 2:9783/1‑149 (MQ=255) taCAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGGTGCGAGCGGGCGTGAGCATGCGGTGACGTTCGTTGGACAGCTGc > 6:241882/2‑148 (MQ=255) gACAATGGCGCCCTTGTGCTCCAGGGCACTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTGc > 7:231581/1‑148 (MQ=255) tgaccagcgcCCTGGAGCACAAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTg < 3:222805/140‑1 (MQ=255) tgaccagcgcCCTGGAGCACAAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTg > 4:222805/7‑146 (MQ=255) aaTGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGG‑CCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTGCGATTc > 7:314787/1‑149 (MQ=255) ccagcgcCCTGGAGCACAAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTGCGATTc < 8:113927/146‑1 (MQ=255) tGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTGCGATTCg < 8:311377/149‑1 (MQ=255) cagcgcCCTGGAGCACAAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTGCGATTc > 3:306721/3‑148 (MQ=255) ggCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTg > 1:109308/1‑112 (MQ=255) ggCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTg < 2:109308/112‑1 (MQ=255) ggCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTGCGATTCGa > 2:62027/1‑149 (MQ=255) cgcCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTGCGATTCGAcc < 8:210076/149‑1 (MQ=255) cccTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTGCGATTCGACCtt < 8:31834/149‑1 (MQ=255) ccTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTGCGATTCGACCTtg > 3:329173/1‑149 (MQ=255) tgCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTGCGATTCGACCTTGTGCa < 7:307048/148‑1 (MQ=255) tCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCTTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGAGTTGACGTTCGTTGGACAGCTTCGATTCGACATTGTGCAGGa > 6:179019/1‑148 (MQ=255) ccAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATACGTTGACGTTCGTTGGACAGCTGCGATTCGACCTTGTGCAGGAAc < 2:11812/149‑1 (MQ=255) ccAGGGCGCTGGTCAGGGCAAAGATA‑TACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTGCGATTCGACCTTGTGCAGGaa > 2:353888/1‑147 (MQ=255) cAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTGCGATTCGACCTTGTGCAGGaa < 6:281275/147‑1 (MQ=255) cAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTGCGATTCGACCTTGTGCAGGAAc < 7:216071/148‑1 (MQ=255) cAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTGCGATTCGACCTTGTGCAGGAAc < 3:157172/148‑1 (MQ=255) | GCGGATCAGGCGGGTGGCCTCGAAGCCGTCCATCTCCGGCATCATCACGTCCATCAGCACCAGGTCGATATCGTCGTGCTGCTCCAGGCGCTCGATGGCTTCGCGCCCGTTGCG‑GCCGATTTCGACAATGGCGCCCTTGTGCTCCAGGGCGCTGGTCAGGGCAAAGATATTACGCACATCGTCGTCCACCAGCAGCACCTTGCGGCCCTCGAACACCTTGTCGCGGCTGCGCGCGGTCTTGAGCATGCGTTGACGTTCGTTGGACAGCTGCGATTCGACCTTGTGCAGGAAC > NC_002947/4289293‑4289584 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |