| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,340,089 | G→C | 30.5% | intergenic (+74/‑257) | ribAB‑II → / → PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,340,089 | 0 | G | C | 30.5% | 38.0 / 24.4 | 36 | intergenic (+74/‑257) | ribAB‑II/PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base G (11/13); new base C (7/4); total (18/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.42e-01 | |||||||||||
GGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGGTTTACCCGCGAATGC‑GAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCA > NC_002947/4339951‑4340233 | ggCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCATTTTATTTAGCGGGGCCCTGTAGGAGC‑GGGTTTACCCGCGAATGC‑GTCGGTGGTGTCACCCTCGCATTcgc < 2:20758/149‑1 (MQ=25) cTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGGTTTACCCGCGAATGC‑GTCGGTGGTGTCACCCTCGCATTCGCgg < 4:39724/149‑1 (MQ=25) cTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGGTTTACCCGCGAATGC‑GTCGGTGGTGTCACCCTCGCATTCGCgg < 3:195554/149‑1 (MQ=25) cTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTCATTTAGCGGGCCCCTGTAGGAGC‑GGGTTTACCCGCGAATGC‑GAGGGTGACACCACCGACGCATTCGCgg < 1:56806/149‑1 (MQ=255) gAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGGTTTACCCGCGAATGC‑GAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCt < 4:63660/148‑1 (MQ=255) cAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGGTTTACCCGCGAATGC‑GAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGc > 3:146754/1‑132 (MQ=255) ccGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGGTTTACCCCCGAGTGC‑GAGGGTGACACCCCCCACGCAATAGCGGGTAAACCCGCTCCGACACGGCCCATGGTGCTTTTGACAGGGCg > 4:268835/1‑147 (MQ=37) cTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGGTTTTACCGCGAATGC‑GAGGGGGGCACCCCCGACGCATTAGCGGGTAAACCCCCACCTAAAGGGCCCGTGGTGGGTTTTTCAGGGCGGGGTGATTGGCGGtgg > 8:201385/1‑147 (MQ=25) acaAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGGTTTTACCCCCAAGGC‑CGGGGGGACCCCCCCCCCCCATTGCCGGGTAAACCCCCCCCAAAACGCCCCGGGGTGGGTTTTAAAGGGGGGGGGGATGGCCGGGGGCCCCAAAc > 2:311367/1‑148 (MQ=255) acaACCAATTGATTTAGCGGGGCCCTGTAGGCGC‑GGGTTTACCCGCGAATCCTTTGGGTGACACCACCGACGCATTCGGGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATa < 1:311367/147‑1 (MQ=37) aGCAATTGATTTCGCGGGGCCCGGTCGGCGC‑GGGTTTCCCCGCGAATGC‑GCGGGTGACACCACCGACGATTGCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCtt < 7:201385/149‑1 (MQ=38) aTTGATTTAGCGGGGCCCTGTCGGAGC‑GGGTTTACCCGCGAATGC‑CCGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCa < 5:296359/149‑1 (MQ=255) gCGGGGCCCTGTCGTCGC‑GGGTTACCCCGCTAATGC‑GCGGGTTACACCACCGACCCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGCGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTgg < 1:266726/149‑1 (MQ=38) gCGGGGCCCTGTAGGCGC‑GGGTTTCCCCGCGAGTGC‑GAGGGTGACACCACCGACGCATGCGCGGTTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTg < 3:268835/148‑1 (MQ=38) gCCCTTTCGGCGG‑GGTTTCACCCGCTATTGC‑GTGGGTCACCCCACCGCCTCTTTGGGGTTAAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATAc < 4:171936/149‑1 (MQ=255) ccccTGTAGGAGC‑GGGTTAACCCGCTAAGGC‑GAGGGTGACACCACCGACGCATTCGCGGTTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATAc < 7:117239/148‑1 (MQ=255) gAGC‑GGGTTTACCCGCGAATGC‑GAGGGTGACACCCCCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGCTGGCCGGGCGCCCCATACCTCTTGCCAAAATCTTGGAATCCCATAatat > 5:193837/1‑148 (MQ=255) ggTTTCCCCGCGAAGGC‑GCGGGGGACCCCCCCGCCGCATTCGCGGTTAAACCCGCTCCTACAGGGCCCTTGGGGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATc < 6:193837/149‑1 (MQ=255) ggTTTACCCGCGAATGC‑GTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATc > 4:322898/1‑149 (MQ=25) ggTTTACCCGCGAATGC‑GAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTg > 4:127011/1‑129 (MQ=255) ggTTTACCCGCGAATGC‑GAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTg < 3:127011/129‑1 (MQ=255) gTTTACCCGCGAATGC‑GTGGGTCACCCCAGGTCCGCATGCGGGTTTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATcc < 3:73667/149‑1 (MQ=255) ccGCGAATGC‑GTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGa > 7:136664/1‑149 (MQ=25) ccGCGAATGC‑GTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGa > 8:341307/1‑149 (MQ=25) ccGCGAATGC‑GTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGa > 7:177074/1‑149 (MQ=25) ccGCGAATGC‑GTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGa > 8:179866/1‑149 (MQ=25) ccGCGAATGC‑GAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTGTTGACAGGGCGGAGTGATGGCCGGGCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATACCGTAGa > 3:274741/1‑149 (MQ=255) gcgAATGC‑GTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGAcc < 7:341307/149‑1 (MQ=25) gcgAATGC‑GAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGAcc > 4:131265/1‑149 (MQ=255) gC‑GAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAg > 3:372628/1‑148 (MQ=255) gAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCt > 5:177102/1‑149 (MQ=255) caccGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCg < 2:89620/146‑1 (MQ=255) caccGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCa > 2:29185/1‑149 (MQ=255) caccGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTATTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCg > 1:89620/1‑146 (MQ=255) caccGACGCATACGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAg > 2:54868/1‑142 (MQ=255) caccGACGCATACGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAg < 1:54868/142‑1 (MQ=255) | GGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGC‑GGGTTTACCCGCGAATGC‑GAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGCAGGCCGGCA > NC_002947/4339951‑4340233 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |