Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,418,167 | G→C | 10.6% | E75Q (GAG→CAG) | PP_3907 → | hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,418,167 | 0 | G | C | 10.6% | 135.8 / 6.4 | 47 | E75Q (GAG→CAG) | PP_3907 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (22/20); new base C (2/3); total (24/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.66e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.81e-01 |
CAGTGGTGAACATTGACCCCAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGCCACGGCCAACCCCAATCACCTGGTGGCGGCCGGCTGGATCG > NC_002947/4418024‑4418314 | cAGTGGTGAACATTGACCCCAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTc < 7:30192/149‑1 (MQ=255) tggtgAACATTGACCCCAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCTTACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGc < 1:308791/149‑1 (MQ=255) gtgAACATTGACCCCAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGc > 2:273880/1‑147 (MQ=255) tgAACATTGACCCCAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAg < 7:250914/149‑1 (MQ=255) tgAACATTGACCCCAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGAACTCAGTCCGGcaaa < 3:101438/149‑4 (MQ=255) aaCATTGACCCCAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGa > 7:269715/1‑137 (MQ=255) aaCATTGACCCCAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGa < 8:269715/137‑1 (MQ=255) ccAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAg > 7:86358/1‑149 (MQ=255) aGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGtc > 1:340459/1‑149 (MQ=255) agcagGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGAACTCAGTCCgg < 1:371415/124‑1 (MQ=255) agcagGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGAACTCAGTCCgg > 2:371415/1‑124 (MQ=255) ggTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTATGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTg < 1:273880/149‑1 (MQ=255) tGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTgcg > 1:42394/1‑149 (MQ=255) gCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTacaa < 2:245371/129‑1 (MQ=255) aTCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGTTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACAATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCgg > 7:270670/1‑120 (MQ=255) aCAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCATCGTGCTTTGCCGGACTGAGTTCGGCGAGCTGTACAACAAGTCGATCGAGGTTgc < 4:108480/139‑1 (MQ=255) aCAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTgc > 3:108480/1‑139 (MQ=255) aGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGc < 3:159878/112‑1 (MQ=255) aGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGc > 4:159878/1‑112 (MQ=255) ggAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAAc < 8:159488/149‑1 (MQ=255) gaagaaCCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGCGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAAc > 6:316323/1‑148 (MQ=255) gaaCCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGAACTCAGTCCGGca < 2:276185/104‑2 (MQ=255) gaaCCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGAACTCAGTCCGGca > 1:276185/1‑103 (MQ=255) aGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCAc < 3:118345/149‑1 (MQ=255) tACGCCAGGTCGTCTACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGGTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTTCGCCGCAAGGCAACTACCGCGCCGAGCACCtgactgac < 7:313289/149‑1 (MQ=255) tACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCtgactgac < 3:121481/149‑1 (MQ=255) gCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAg < 2:118542/104‑1 (MQ=255) gCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAg > 1:118542/1‑104 (MQ=255) cAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGAt > 1:159560/1‑149 (MQ=255) gtcgACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTa > 3:31676/1‑80 (MQ=255) gtcgACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTa < 4:31676/80‑1 (MQ=255) gtcgACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAgg < 2:159560/148‑1 (MQ=255) cgGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCtat < 5:360833/149‑1 (MQ=255) gATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATAcc < 4:290659/144‑1 (MQ=255) gATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATAcc > 3:290659/1‑144 (MQ=255) ccGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGCCACgg < 2:42394/149‑1 (MQ=255) gACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGCCACGGCCAAcc > 3:30818/1‑149 (MQ=255) ccATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGCCACGGCCAAccc > 3:63166/1‑148 (MQ=255) cATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGCCACGGCCAAcccc > 2:350701/1‑148 (MQ=255) tctcAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGCCACGGCCAACCCCAATCAcc > 4:355304/1‑149 (MQ=255) aGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGCCACGGCCAACCCCAATCACCtggt < 3:355304/149‑1 (MQ=255) aGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACAGACCTGCGGGCCACGGCCAACCCCAATCACCtggt > 8:142965/1‑149 (MQ=255) gCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGCCACGGCCAACCCCAATCACCTGGTggcgg < 1:371855/149‑1 (MQ=255) tttGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGCCACGGCCAACACCAATCACCTGGTGGcggcc > 3:141956/1‑149 (MQ=255) tttGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGACGCGACCTATACCGACCTGCGGGCCACGGCCAACCCCAATCACCTGGTGGcggcc > 4:307920/1‑149 (MQ=255) gCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGCCACGGCCAACCCCAATCACCTGGTGGcggccggc > 3:309510/1‑149 (MQ=255) tGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGCCACGGCCAACCCCAATCACCTGGTGGCGGCCGGCTGGATCg > 3:62155/1‑149 (MQ=255) | CAGTGGTGAACATTGACCCCAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGCCACGGCCAACCCCAATCACCTGGTGGCGGCCGGCTGGATCG > NC_002947/4418024‑4418314 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |