Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,418,171 | T→C | 10.6% | F76S (TTC→TCC) | PP_3907 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,418,171 | 0 | T | C | 10.6% | 123.1 / 5.6 | 47 | F76S (TTC→TCC) | PP_3907 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (22/20); new base C (2/3); total (24/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.66e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 |
CAGTGGTGAACATTGACCCCAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGC‑‑CACGGCCAACCCCAATCACCTGGTGGCGGCCGGCTGGATCGCCAT > NC_002947/4418024‑4418318 | cAGTGGTGAACATTGACCCCAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTc < 7:30192/149‑1 (MQ=255) tggtgAACATTGACCCCAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCTTACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGc < 1:308791/149‑1 (MQ=255) gtgAACATTGACCCCAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGc > 2:273880/1‑147 (MQ=255) tgAACATTGACCCCAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAg < 7:250914/149‑1 (MQ=255) tgAACATTGACCCCAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGAACTCAGTCCGGcaaa < 3:101438/149‑4 (MQ=255) ccAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAg > 7:86358/1‑149 (MQ=255) aGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGtc > 1:340459/1‑149 (MQ=255) agcagGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGAACTCAGTCCgg < 1:371415/124‑1 (MQ=255) agcagGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGAACTCAGTCCgg > 2:371415/1‑124 (MQ=255) ggTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTATGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTg < 1:273880/149‑1 (MQ=255) tGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTgcg > 1:42394/1‑149 (MQ=255) gCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTacaa < 2:245371/129‑1 (MQ=255) aTCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGTTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACAATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCgg > 7:270670/1‑120 (MQ=255) aCAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCATCGTGCTTTGCCGGACTGAGTTCGGCGAGCTGTACAACAAGTCGATCGAGGTTgc < 4:108480/139‑1 (MQ=255) aCAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTgc > 3:108480/1‑139 (MQ=255) aGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGc > 4:159878/1‑112 (MQ=255) aGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGc < 3:159878/112‑1 (MQ=255) ggAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAAc < 8:159488/149‑1 (MQ=255) gaagaaCCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGCGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAAc > 6:316323/1‑148 (MQ=255) gaaCCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGAACTCAGTCCGGca < 2:276185/104‑2 (MQ=255) gaaCCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGAACTCAGTCCGGca > 1:276185/1‑103 (MQ=255) aGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCAc < 3:118345/149‑1 (MQ=255) tACGCCAGGTCGTCTACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGGTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTTCGCCGCAAGGCAACTACCGCGCCGAGCACCtgactgac < 7:313289/149‑1 (MQ=255) tACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCtgactgac < 3:121481/149‑1 (MQ=255) gCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAg > 1:118542/1‑104 (MQ=255) gCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAg < 2:118542/104‑1 (MQ=255) cAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGAt > 1:159560/1‑149 (MQ=255) gtcgACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTa < 4:31676/80‑1 (MQ=255) gtcgACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTa > 3:31676/1‑80 (MQ=255) gtcgACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAgg < 2:159560/148‑1 (MQ=255) cgGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCtat < 5:360833/149‑1 (MQ=255) gATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATAcc > 3:290659/1‑144 (MQ=255) gATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATAcc < 4:290659/144‑1 (MQ=255) ccGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGC‑‑CACgg < 2:42394/149‑1 (MQ=255) gACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGC‑‑CACGGCCAAcc > 3:30818/1‑149 (MQ=255) ccATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGC‑‑CACGGCCAAccc > 3:63166/1‑148 (MQ=255) cATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGC‑‑CACGGCCAAcccc > 2:350701/1‑148 (MQ=255) tctcAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGC‑‑CACGGCCAACCCCAATCAcc > 4:355304/1‑149 (MQ=255) aGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGC‑‑CACGGCCAACCCCAATCACCtggt < 3:355304/149‑1 (MQ=255) aGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACAGACCTGCGGGC‑‑CACGGCCAACCCCAATCACCtggt > 8:142965/1‑149 (MQ=255) gCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGC‑‑CACGGCCAACCCCAATCACCTGGTggcgg < 1:371855/149‑1 (MQ=255) tttGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGC‑‑CACGGCCAACACCAATCACCTGGTGGcggcc > 3:141956/1‑149 (MQ=255) tttGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGACGCGACCTATACCGACCTGCGGGC‑‑CACGGCCAACCCCAATCACCTGGTGGcggcc > 4:307920/1‑149 (MQ=255) gCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGC‑‑CACGGCCAACCCCAATCACCTGGTGGcggccggc > 3:309510/1‑149 (MQ=255) tGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGC‑‑CACGGCCAACCCCAATCACCTGGTGGCGGCCGGCTGGATCg > 3:62155/1‑149 (MQ=255) aGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGC‑‑CACGGCCAACCCCAATCACCTGGTGGCGGCCGGCTGGATCg < 4:141956/147‑1 (MQ=255) gTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGCCATGGCGGCCAACCCCAATCACCAGGTGGCGGCCGGCTGGATCGc > 1:126723/1‑149 (MQ=255) ttCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCCACCTGCGGGC‑‑CACGGCCAACCCCAATCACCTGGTGGCGGCCGGCTGGATCGCCAt > 8:71622/1‑149 (MQ=255) | CAGTGGTGAACATTGACCCCAGCGGTCAGCAGGTGCTGATCAACAGGAAGAACCTCAAGCAGATCCGCATACGCCAGGTCGTCGACGCGGTTTGCGATATCCCGCACCGGTGGACCATCTATCTCAGCGTGCTTTGCCGGACTGAGTTCGGCGAGCGGTACAACAAGTCGATCGAGGTTGCGCCGCAAGGCAACTACCGCGCCGAGCACCTGACTGACGTGATCGAGGCGACCTATACCGACCTGCGGGC‑‑CACGGCCAACCCCAATCACCTGGTGGCGGCCGGCTGGATCGCCAT > NC_002947/4418024‑4418318 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |