| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,442,628 | C→G | 6.9% | intergenic (‑98/+40) | nicP‑II ← / ← nicT | porin‑like protein/metabolite transport protein NicT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,442,628 | 0 | C | G | 6.9% | 222.0 / 6.4 | 73 | intergenic (‑98/+40) | nicP‑II/nicT | porin‑like protein/metabolite transport protein NicT |
| Reads supporting (aligned to +/- strand): ref base C (37/31); new base G (2/3); total (39/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.59e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.27e-01 | |||||||||||
CGGCCAGGCGTGCAGACGAAGAAAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGCCGGTGAGGTCG > NC_002947/4442482‑4442773 | cgGCCAGGCGTGCAGACGAAGAAAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCg > 2:120949/1‑149 (MQ=255) ggCCAGGCGTGCAGACGAAGAAAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCgg > 3:280305/1‑149 (MQ=255) gCCAGGCGTGCAGACGAAGAAAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGc > 3:68795/1‑149 (MQ=255) tgtgTGCAGACGAAGAAAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGccc < 3:276994/144‑1 (MQ=255) cGTGCAGACGAAGAAAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCGGGGCCCGcct < 8:48414/149‑1 (MQ=255) cGTGCAGACGAAGAAAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCGGGGCCCGcct < 4:141694/149‑1 (MQ=255) tGCAGACGAAGAAAAACGCGGCGCAGTGAAACCTTGCATAGGGCTGCTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGcctgc > 2:322308/1‑149 (MQ=255) aGACGAAGAAAAACGCGGCGCAGTGAAACCATGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGcctgccct < 3:264750/149‑1 (MQ=255) aCGAAGAAAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGcctgccctgc > 8:172221/1‑149 (MQ=255) cGAAGAAAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCCGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCctgccctgcc < 1:120949/149‑1 (MQ=255) cGAACAAAAACGCCGCGCAGTGAAACCTTCCATACGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCCCGGCGGCACTGCATGGCCACC‑GGCGTGCTGGTTGCATCTACAGACG‑‑TCGGCAGGCGGGCCCCGGCCCGCctgccctgcc < 5:360158/149‑1 (MQ=255) gaagaaAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCg > 8:243326/1‑149 (MQ=255) gaagaaAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCg > 3:174494/1‑149 (MQ=255) aaaaaCGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGc > 7:334237/1‑149 (MQ=255) aaaCGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGt < 2:29377/149‑1 (MQ=255) aCGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCGGGGCCCGc > 2:45570/1‑130 (MQ=255) aCGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCGGGGCCCGc < 1:45570/130‑1 (MQ=255) cgcgGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGaa < 2:74398/149‑1 (MQ=255) gTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGc > 4:47927/1‑149 (MQ=255) tGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCCGGCGGGCCCCCGCCCGCCTGGCCTGCCGGTTCGTGAAGCGCTGGGcc > 1:360260/1‑149 (MQ=255) tGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGcc > 5:3414/1‑149 (MQ=255) aCCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGc > 6:345224/1‑147 (MQ=255) ccTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCAGCCCAGCCGTTGCGTGAAGTGCTGGGCCGCTAg > 8:138313/1‑149 (MQ=255) cTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGc > 7:242891/1‑149 (MQ=255) cATAGGGCTGCTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGtt < 1:322308/149‑1 (MQ=255) tAGGGCTACTCCTTGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGa < 4:280305/149‑1 (MQ=255) gggCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGAc < 3:115445/148‑1 (MQ=255) caaCTCCTCCATTTGCGCAACAGCAACCCGGCGCGTCCGCACTCCATGGCCACC‑GGCCTGCGGGTAGCATCGAGAGAGG‑‑TCGGCAGCCCGGCCCCGGCCCCCCTGCCCAGCCGTTGCGTCAAGCGCAGGGCCGCAAGCGGTTGACCAGc > 2:67651/3‑149 (MQ=255) tCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGAcc > 3:212975/1‑142 (MQ=255) tCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGAcc < 4:212975/142‑1 (MQ=255) tCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTgg > 6:307194/1‑149 (MQ=255) ccTGGATTTCGCCCACAGCAACCCGGCGCGGCGGCACGGCCTGGCCACC‑GGCGGGCGGGTTGCATCGAGCGAGG‑‑CCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTCCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGc < 4:68795/149‑1 (MQ=255) ttgtaTTGGGGAAACCGCACCCGGGCGGGGGGCCACTGC‑TGGCCCCCGGGGGTGGGGTTTGCATGTAGTCTGG‑‑GCGGCTGGGGGGCCCGGGCCGGCGTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGcc < 2:360260/145‑1 (MQ=255) cTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCCGCCCCCCTGCCCAGCCCTTGCGTGAAGCGCTGGGGCGCGAGCGGTTGACCAGC‑GTgggc > 1:360476/1‑147 (MQ=255) tGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTg > 7:63596/1‑113 (MQ=255) tGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTg < 8:63596/113‑1 (MQ=255) tGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAg < 7:172221/148‑1 (MQ=255) gCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGa > 8:281001/1‑149 (MQ=255) cAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGAt < 4:174494/149‑1 (MQ=255) cAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGAt > 8:117036/1‑149 (MQ=255) aaCAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGAt > 3:137369/1‑148 (MQ=255) cAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGAc > 1:224944/1‑149 (MQ=255) agaaaCCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGGAAGAGGCAGGCGCGCCCCGGCCCGCCTGCCATGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGa > 1:107971/4‑149 (MQ=255) aCCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGa < 6:3414/149‑1 (MQ=255) cccGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGaa > 8:167969/1‑149 (MQ=255) cggcggCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTg < 5:307194/149‑1 (MQ=255) ggcggcACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGa < 3:47927/149‑1 (MQ=255) ggcggcACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGa < 2:224944/149‑1 (MQ=255) gcggcACTGATGGGCCCCG‑GGGGTGCGGTTTGAATCGAGTTCGG‑‑GCGGCTGGCGGGCCCCGGCCGGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAg < 2:360476/149‑1 (MQ=255) cggcACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAgg < 7:117036/149‑1 (MQ=255) cACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATc < 5:345224/149‑1 (MQ=255) cATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAgg < 7:281001/147‑1 (MQ=255) cATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGc < 7:138313/148‑1 (MQ=255) aTGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAg > 6:24794/1‑149 (MQ=255) gCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAaca > 5:332099/1‑149 (MQ=255) gCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCAGGCAAaca > 7:353069/1‑149 (MQ=255) aTCGTGAGTGG‑‑GCGGCAGACGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCTCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCAcag < 4:60519/143‑1 (MQ=255) aTCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCAcagcgcagc < 7:167969/149‑1 (MQ=255) aTCGAGAGAGG‑‑TCGGCAGACGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCAcag > 3:60519/1‑143 (MQ=255) tCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGCCCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCAcagcgcagcg > 2:87128/1‑149 (MQ=255) agagG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGc > 1:205492/1‑147 (MQ=255) gagG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAg < 7:243326/149‑1 (MQ=255) g‑‑TCGGCCGGCGGGCCCCGGCCCGCCGGCCCGGCCGGTGCGGGAAGCGCGGGGGCGCGAGCGGGTGGCCAGC‑GTGGGCGGCCAGGCGATGACCAGGAAGCAGCGGAGGATCAGGCAGCCGGCCAACCCCCACAGCCCCGCGTGCGAGGTg > 8:20854/1‑149 (MQ=255) g‑‑TCGGCCGGCGGGCCCCCGCCCCCCGGCCCTGCCGTTGCGTGAAGCGCGGGGCCGCGAGCGGGTGGACAGCATGGGCCGGC‑AGGCGGGGGCCCCGGAGCAGCGGAGGGTGAGGCCGCCCGCCAACCCCCACAGCCCAGCGTGCggcgtg > 8:221679/1‑144 (MQ=255) cGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGcc > 2:363024/1‑149 (MQ=255) ggCAGGCGGGCCGGGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGCCg > 3:154667/1‑149 (MQ=255) ggCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGCCg < 7:221679/149‑1 (MQ=255) gCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGCCgg > 5:268576/1‑149 (MQ=255) gCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGCCgg > 3:331788/1‑149 (MQ=255) aGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGCCGGTg > 7:200315/1‑149 (MQ=255) gCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGCCGGTGAg < 8:200315/149‑1 (MQ=255) gggCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGCCGGTGAGGt < 4:331788/149‑1 (MQ=255) gCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGCCGGTGAGGTCg < 4:137369/149‑1 (MQ=255) | CGGCCAGGCGTGCAGACGAAGAAAAACGCGGCGCAGTGAAACCTTGCATAGGGCTACTCCTGGATTTGGGCAACAGCAACCCGGCGCGGCGGCACTGCATGGCCACC‑GGCGTGCGGGTTGCATCGAGAGAGG‑‑TCGGCAGGCGGGCCCCGGCCCGCCTGCCCTGCCGTTGCGTGAAGCGCTGGGCCGCTAGCGGTTGACCAGC‑TTGGCCGGCAAGGCGATGACCAGGAAGCAGCTGAGGATCAGGCAGCCGGCAAACACCCACAGCGCAGCGTGCGAGGTGCCGGTGAGGTCG > NC_002947/4442482‑4442773 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |