| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 353,067 | A→G | 100% | intergenic (+34/+84) | hisF → / ← cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 353,067 | 0 | A | G | 100.0% | 162.8 / NA | 49 | intergenic (+34/+84) | hisF/cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (25/24); total (25/24) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GGAAGGGCATGCCAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCAGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCC > NC_002947/352925‑353198 | ggAAGGGCATGCCAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACg > 1:235412/1‑149 (MQ=255)ggAAGGGCATGCCAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACg > 5:368915/1‑149 (MQ=255) gAAGGGCATGCCAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGc > 5:24329/1‑149 (MQ=255) aaGGGCATGCCAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGcc < 2:235412/149‑1 (MQ=255) gCATGCCAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑t > 7:136354/1‑149 (MQ=255) ccgCCAGCACCGCGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCCCGCCCGC‑Tcc > 5:8283/3‑149 (MQ=39) ccAGGGGGGTGGTGGCGGCCAGGATCTTCCAGTTTGGCTAGTACACAGTGCCGTAGGCCAAGGCCTAGATGGCTTCGCGCGGGATCGTCGTTCGCTGATCGATTGAGCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCcac < 8:309764/149‑1 (MQ=37) ccAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCca > 5:147943/1‑148 (MQ=255) gcgGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGtt < 1:92041/149‑1 (MQ=255) gcgGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGtt < 5:38867/149‑1 (MQ=255) ggTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTg < 6:368915/149‑1 (MQ=255) cTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACAGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACCCCCGC‑TCCCACAGGTTTGATg > 4:158839/1‑148 (MQ=255) gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCtgtg < 5:39365/149‑1 (MQ=255) aTCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCCAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCtgtg < 1:89049/148‑1 (MQ=255) tCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTgg > 5:187350/1‑147 (MQ=255) aCTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGc < 6:147943/149‑1 (MQ=255) aCTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGc < 3:190594/149‑1 (MQ=255) gCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCCCCCCCCCAACCCCAAGGTTTG‑GGAGATATCTGTGGGAGCGGGCggggcc > 2:173226/1‑144 (MQ=255) cGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCCCGCCCCC‑GCCCCCAGGGTTGGGGAGCTGTCTGTGGGGGCGGGCGGGGCCCCGCAggggcccgcc > 1:348637/1‑142 (MQ=255) cGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGGTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCcgcg > 6:106891/1‑147 (MQ=255) aaGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTga < 8:154619/101‑1 (MQ=255) aaGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTga > 7:154619/1‑101 (MQ=255) gCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAAt < 5:106891/149‑1 (MQ=255) ccTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGt < 1:19767/118‑1 (MQ=255) ccTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGt > 2:19767/1‑118 (MQ=255) tACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGCGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCAAAGGTTTGCTGAGTTCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGc > 1:266693/1‑149 (MQ=255) aCATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCcg < 1:295352/130‑1 (MQ=255) aCATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCcg > 2:295352/1‑130 (MQ=255) ttCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGCGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCCC‑ACCCACCCGTTTGCTGAGAACTCTGTGGGAGCGGGCGGGCCCCCGCAGGGCCGCCCAGCGGCCCCAATTGCTTaaaacc > 5:237573/1‑146 (MQ=37) gATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATATCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTg > 3:277450/1‑149 (MQ=255) cgtcgtTCGCTGATCCATTGACCGGGGCGGCTTTG‑CAGCCCTGCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCg < 4:146624/149‑1 (MQ=255) tcgtTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCCC‑TCCCACAGGTTTGCTGAGATGTCTGTGGGAGCCGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGag > 2:7003/1‑149 (MQ=255) tcgtGCGCTGACCCATTGACCGGGGCGCCTTGC‑CAGCCCTCCGCGGCCACGCCCGC‑TCCCACAGGTTTGCTGCGATCTCTGGGGGCGCGGGGGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGag < 6:24329/149‑1 (MQ=37) ttCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagcag > 2:13572/1‑149 (MQ=255) gCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCCC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAgcgc > 1:296280/1‑149 (MQ=255) tGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACCCCCCC‑TCCCACAGGTTTGCGGAGATCTGTGTGGGAGCCGGCGGGCCCGCGAACGGCCGCGGAGCGGCCCCACATGGGTGAACCCGGGTTGTTGGCGCGCCGCGCGt > 4:91300/1‑149 (MQ=19) aTCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGc > 5:75854/1‑135 (MQ=255) aTCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGc < 6:75854/135‑1 (MQ=255) aTCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTg < 6:187350/148‑1 (MQ=255) aTCCATTGACCGGGGCTGCTTGG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGCCATCTCTGGGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGt < 3:158839/147‑1 (MQ=38) gccatgcaCCGGGGCTGCTTCG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGt < 4:110209/142‑1 (MQ=255) cATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTa < 1:13572/148‑1 (MQ=255) aTTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTaaa < 5:317963/149‑1 (MQ=255) aTTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTaaa < 4:277450/149‑1 (MQ=255) aTTGACCGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑GCCCCCAGGGTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGCAGCGGCCCCCAATGGGTGAACCGTGGGTCTTGCCGCGCAGCGCGTGGTa > 7:22246/1‑147 (MQ=25) ccGGGGCTGCTTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTTAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCg < 1:173226/149‑1 (MQ=255) ctgctTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATcc > 7:352475/1‑149 (MQ=255) tgctTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATccc > 2:38548/1‑149 (MQ=255) gctTTG‑CAGCCCTTCGCGGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATcccc < 8:352475/149‑1 (MQ=255) | GGAAGGGCATGCCAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTG‑CAGCCCTTCGCAGGCACGCCCGC‑TCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCC > NC_002947/352925‑353198 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |