Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 4,809,119 C→G 8.9% A225G (GCC→GGC)  dsbD‑II → thiol/disulfide interchange protein 2

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,809,1190CG 8.9% 170.1 / 5.2 55A225G (GCC→GGC) dsbD‑IIthiol/disulfide interchange protein 2
Reads supporting (aligned to +/- strand):  ref base C (22/28);  new base G (2/3);  total (24/31)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGATGCTGCCGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGCGTCTTCGAACTGCAACTGCCTGCCGCCCTGCGCGACCGCCTGGACCGCGCCGGGCAAGG  >  NC_002947/4808981‑4809263
                                                                                                                                            |                                                                                                                                                
cGATGCTGCCGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAg                                                                                                                                        >  2:192088/1‑149 (MQ=255)
  aTGCTGCCGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGc                                                                                                                                      <  4:282310/149‑1 (MQ=255)
  aTGCTGCCGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCAGCAGGCTGGCACCCAGCAggg                                                                                                                                      <  3:360831/149‑2 (MQ=255)
     ctgcCGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCt                                                                                                                                    <  4:239092/148‑1 (MQ=255)
      tgcCGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTgg                                                                                                                                  >  6:153128/1‑149 (MQ=255)
      tgcCGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTgg                                                                                                                                  <  2:54227/149‑1 (MQ=255)
        ccGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCt                                                                                                                                >  7:51635/1‑149 (MQ=255)
        ccGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCt                                                                                                                                >  6:105691/1‑149 (MQ=255)
         ggATCGTTGCGGGGGTGGTGGGGGGAAATGGCGCATGTGCCGGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTg                                                                                                                               <  2:376599/148‑1 (MQ=255)
             ccTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTgcag                                                                                                                            >  1:296869/1‑148 (MQ=255)
              cTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGCCAGGCCTgcagg                                                                                                                           <  4:25003/148‑2 (MQ=255)
                     ggCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTgg                                                                                                                   <  7:27584/149‑1 (MQ=255)
                             cTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTggg                                                                                                           <  5:24672/149‑1 (MQ=255)
                             cTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTggg                                                                                                           <  6:151631/149‑1 (MQ=255)
                             cTGGGCAATGGCGCCAGGGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTggg                                                                                                           <  8:343269/149‑1 (MQ=255)
                                    aTGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTg                                                                                                    >  7:283562/1‑149 (MQ=255)
                                    aTGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCCGCAGGCCTGGCTGCAGCAACCCTGGCTGCCCAGCAGccag                                                                                                    <  2:196274/149‑3 (MQ=255)
                                      ggCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGc                                                                                                  >  4:48525/1‑149 (MQ=255)
                                       gcgcCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCAGGCTGCCCAGCAGCCAgggt                                                                                                 <  2:139982/149‑3 (MQ=255)
                                           cAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGc                                                                                             <  1:192088/149‑1 (MQ=255)
                                           cAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGc                                                                                             >  3:186403/1‑149 (MQ=255)
                                             gTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTg                                                                                           >  7:114289/1‑149 (MQ=255)
                                             agtgccGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTg                                                                                           >  5:162678/5‑149 (MQ=255)
                                                 ccGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCGTGGGCTGGGGGTGGTTGCTGCCCTCATGGGTGCCAGCCTGCAGGCATGGCTCCAGCAACCATGGCTGCTGGGCAGCATGGCGGGGCTGTTc                                                                                        >  1:108415/1‑149 (MQ=255)
                                                    gcgcGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGtgc                                                                                    >  4:353290/1‑149 (MQ=255)
                                                        ggctggctGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCAGGCTGGCACCCAGCAgg                                                                                                                                       >  2:34657/1‑94 (MQ=255)
                                                        ggctggctGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGCTTGCTGCCCTGCAGGCTGGCACCCAGCAgg                                                                                                                                       <  1:34657/94‑1 (MQ=255)
                                                             gctgctGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGccc                                                                           >  2:338705/1‑149 (MQ=255)
                                                               tgctgGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTg                                                                         >  8:167951/1‑149 (MQ=255)
                                                               tgctgGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTg                                                                         >  1:371716/1‑149 (MQ=255)
                                                               tgctgGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCAGGCTGGCACCCAGCAgggc                                                                                                                                     >  6:93495/1‑87 (MQ=38)
                                                               tgctgGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCAGGCTGGCACCCAGCAgggc                                                                                                                                     <  5:93495/89‑3 (MQ=38)
                                                                 ctgGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTg                                                                         <  3:353290/147‑1 (MQ=255)
                                                                    gCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGa                                                                     <  4:340471/148‑1 (MQ=255)
                                                                         ggTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCg                                                               <  2:296869/149‑1 (MQ=255)
                                                                          gTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCgg                                                              <  7:167951/149‑1 (MQ=255)
                                                                           tCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGc                                                             <  8:114289/149‑1 (MQ=255)
                                                                           tCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGc                                                             <  8:283562/149‑1 (MQ=255)
                                                                               tgtgCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGCGTc                                                          <  6:162678/148‑1 (MQ=255)
                                                                               tgtgCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGCGTCt                                                         <  2:108415/149‑1 (MQ=255)
                                                                                 tgCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCGGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGCGTCtt                                                        <  6:298346/148‑1 (MQ=255)
                                                                                        cATGGCCCTGGTGTACGCCGGGCTGGGGGTAGGTTGCTGCCCTGCTGGGTGCCCGCCTGCAGGCCTGGCTGCAGCACCCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGCGTCTTCGaactg                                                 >  1:34698/1‑149 (MQ=255)
                                                                                              ccTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGCGTCTTCGaactgcaactgc                                          <  6:12903/149‑1 (MQ=255)
                                                                                                  gtgtACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGccc                                                                           <  3:14848/112‑1 (MQ=255)
                                                                                                  gtgtACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGccc                                                                           >  4:14848/1‑112 (MQ=255)
                                                                                                                tGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGCGTCTTCGAACTGCAACTGCCTGCCGCCCTGCGCGAc                         >  8:129114/1‑149 (MQ=255)
                                                                                                                         gtTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGCGTCTTCGAACTGCAACTGCCTGCCGCCCTGCGCGACCGCCTGGa                 <  3:335411/149‑1 (MQ=255)
                                                                                                                              tgcCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGCGTCTTCGAACTGCAACTGCCTGCCGCCCTGCGCGACCGCCTGGACcgcg            >  3:347069/1‑149 (MQ=255)
                                                                                                                                cccTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGCGTCTTCGAACTGCAACTGCCTGCCGCCCTGCGCGACCGCCTGGACCGCGcc          <  3:48525/149‑1 (MQ=255)
                                                                                                                                  ctgctgGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGCGTCTTCGaactgcaactgc                                          <  7:307338/115‑1 (MQ=255)
                                                                                                                                  ctgctgGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGCGTCTTCGaactgcaactgc                                          >  8:307338/1‑115 (MQ=255)
                                                                                                                                   tgctgGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGCGTCTTCGAACTGCAACTGCCTGCCGCCCTGCGCGACCGCCTGGACCGCGCCggg       >  2:165491/1‑149 (MQ=255)
                                                                                                                                      tgGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGCGTCTTCGAACTGCAACTGCCTGCCGCCCTGCGCGACCGCCTGGACCGCGCCGGGc      >  1:364667/1‑147 (MQ=255)
                                                                                                                                        ggTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGTTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGCGTCTTCGAACTGCAACTGCCTGCCGCCCTGCGCGACCGCCTGGACCGCGCCGGGCAAg   <  8:51635/148‑1 (MQ=255)
                                                                                                                                        ggTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGCGTCTTCGAACTGCAACTGCCTGCCGCCCTGCGCGACCGCCTGGACCGCGCCGGGCAAgg  <  1:338705/149‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                                
CGATGCTGCCGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCTGAGCATGGCCCTGGTGTACGCCGGGCTGGGGGTGGTTGCTGCCCTGCTGGGTGCCAGCCTGCAGGCCTGGCTGCAGCAACCCTGGCTGCTGGGCAGCCTGGCGGGGCTGTTCGTGCTGCTGGCCCTGCCGATGTTCGGCGTCTTCGAACTGCAACTGCCTGCCGCCCTGCGCGACCGCCTGGACCGCGCCGGGCAAGG  >  NC_002947/4808981‑4809263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: