| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,821,134 | G→C | 5.8% | L3352L (CTC→CTG) | pvdL ← | non‑ribosomal peptide synthetase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,821,134 | 0 | G | C | 5.8% | 261.9 / 4.1 | 80 | L3352L (CTC→CTG) | pvdL | non‑ribosomal peptide synthetase |
| Reads supporting (aligned to +/- strand): ref base G (34/41); new base C (3/2); total (37/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTTCGCCAAGGGCCTGGTAGACCTCGAAGAAATCGTTCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGGTTGCCCGGCTTGTGGATGATCTGCAGCATCGCCTCGCCGC > NC_002947/4820986‑4821279 | cTTCGCCAAGGGCCTGGTAGACCTCGAAGAAATCGTTCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTg > 4:56523/1‑149 (MQ=255) ccAAGGGCCTGGTAGACCTCGAAGAAATCGTTCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGc > 7:116688/1‑147 (MQ=255) cAAGGGCCTGGTAGACCTCGAAGAAATCGTTCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAg > 2:250190/1‑149 (MQ=255) cAAGGGCCTGGTAGACCTCGAAGAAATCGTTCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAg > 4:208598/1‑149 (MQ=255) gggCCTGGTAGACCTCGAAGAAATCGTTCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGa > 2:297639/1‑141 (MQ=255) gggCCTGGTAGACCTCGAAGAAATCGTTCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGa < 1:297639/141‑1 (MQ=255) gTAGACCTCGAAGAAATCGTTCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGCCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCgg < 6:59286/149‑1 (MQ=255) gACCTCGAAGAAATCGTTCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCt < 5:100127/149‑1 (MQ=255) cGAAGAAATCGTTCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCCGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTAGCTCAGCAAGGCAAAGCCGGCCTCccgc > 4:237827/1‑149 (MQ=255) gaagaaATCGTTCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGTGCAAGGCAAAGCCGGCCTcgcg < 7:55838/147‑1 (MQ=255) agaaATCGTTCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTcc < 3:233822/149‑1 (MQ=255) gaaATCGTTCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAGGGCAAAGCCGGCCTCGCGCTCCt > 2:236729/1‑149 (MQ=255) aaTCGTTCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGc < 1:250190/149‑1 (MQ=255) gTTCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTtgt > 4:126611/1‑149 (MQ=255) ttCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTTGCTCAGCGAGGCaccgt < 4:7116/127‑5 (MQ=255) ttCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTTGCTCAGCGAGGCaccgt > 3:7116/1‑123 (MQ=255) atcaACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCGAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAg > 5:112348/1‑149 (MQ=255) atcaACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAg < 3:40643/149‑1 (MQ=255) tcaACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAgg < 1:327739/149‑1 (MQ=255) ggCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGATCCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGgcgc < 1:315115/149‑1 (MQ=255) cACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCACTGGCGCACCCGGCGCAGGTGGAACGGTCCCTCGCTGAGAAAGGCAAACCCGCCCTCGCGATCCTGATTGTGCAGGGCCTGCAGgcgc > 1:302806/1‑149 (MQ=255) cACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTcgc < 8:67612/118‑1 (MQ=255) cACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTcgc > 7:67612/1‑118 (MQ=255) aCCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGCGCCTGCAGGCcctgc < 3:208598/149‑1 (MQ=255) ccAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAGGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCgctgct < 1:236729/149‑1 (MQ=255) cAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTc > 5:14085/1‑149 (MQ=255) cAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTc > 3:347257/1‑149 (MQ=255) ggCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCt < 5:135146/149‑1 (MQ=255) cATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTgg < 3:126611/149‑1 (MQ=255) tCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTggg > 5:52077/1‑148 (MQ=255) aGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCAtcgt < 7:273190/148‑1 (MQ=255) gATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAg > 7:264448/1‑85 (MQ=255) gATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAg < 8:264448/85‑1 (MQ=255) aTGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCa < 4:152175/124‑1 (MQ=255) aTGTGGTGGTTGCTCATCATGAACCAGTAGAGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCa > 3:152175/1‑124 (MQ=255) gtggtTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAgg < 3:56523/148‑1 (MQ=255) ttGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGc < 6:42780/105‑1 (MQ=255) ttGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGc > 5:42780/1‑105 (MQ=255) tcatcaTGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCAGCGCCAg > 4:114728/1‑149 (MQ=255) atcatGATCCAGTTGCGTTCCTCGGCCAC‑‑GCGCTCCAGGCGCAGGTGGAACGGGGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGgcgc < 6:112401/114‑1 (MQ=255) atcatGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGt > 4:137179/1‑148 (MQ=255) atcatGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGt < 3:137179/148‑1 (MQ=255) atcatGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGCTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGgcgc > 5:112401/1‑114 (MQ=255) tGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTgg > 1:169771/1‑149 (MQ=255) tGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTgg < 5:308277/149‑1 (MQ=255) tGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTgg < 2:302806/149‑1 (MQ=255) gAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTgg > 7:252667/1‑148 (MQ=255) aaCCAGTAGCGTTCCTGGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTa < 3:237827/149‑1 (MQ=255) aaCCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTgg > 7:220087/1‑147 (MQ=255) aaCCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTgg > 5:287986/1‑147 (MQ=255) cAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGt > 2:164890/1‑148 (MQ=255) cAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTc > 3:162817/1‑149 (MQ=255) cAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTc < 8:116688/149‑1 (MQ=255) gCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCg > 2:256851/1‑149 (MQ=255) ttCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGc > 2:219284/1‑147 (MQ=255) ccTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAg < 1:219284/148‑1 (MQ=255) ccTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAg < 8:252667/148‑1 (MQ=255) cTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAgg < 4:347257/148‑1 (MQ=255) gcgcACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGGTTGCCCGGCt > 3:74215/1‑149 (MQ=255) gcgcACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGGTTGCCCGGCt > 5:345504/1‑149 (MQ=255) gcACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGGTTGCCCGGCTtg < 4:162817/149‑1 (MQ=255) gcACCAGGCGCAGGTGCAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGGTTGCCCGGCTtg > 4:253695/1‑149 (MQ=255) cACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGGTTGCCCGGCTtgt < 6:52077/149‑1 (MQ=255) cAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGGTTGCCCGGCTTGTGga < 1:256851/149‑1 (MQ=255) aGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGGTTGCCCGGCTTGTGgat < 2:169771/149‑1 (MQ=255) aGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGGTTGCCCGGCt < 4:183585/136‑1 (MQ=255) aGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGGTTGCCCGGCt > 3:183585/1‑136 (MQ=255) aGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGGTTGCCCGGCTTGTGGATGATCTg < 6:345504/149‑1 (MQ=255) aGGTGCAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGGTTGCCCGGCTTGTGGATGATCTg < 3:253695/149‑1 (MQ=255) ggAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCAtc < 4:303871/82‑1 (MQ=255) ggAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCAtc > 3:303871/1‑82 (MQ=255) tttGCCTTGCTCAGCGAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATGGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGGCAGGTTGCCCGGCTTGTGga < 5:209051/131‑1 (MQ=255) tttGCCTTGCTCAGCGAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGGTTCCCCGGCATGTGga > 6:209051/3‑133 (MQ=255) tGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCa < 6:377433/113‑1 (MQ=255) tGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCa > 5:377433/1‑113 (MQ=255) ccTCGCTGAGCGAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGGTTGCCCGGCTTGTGGATGATCTGCAGCAtcgcctc < 6:112348/148‑1 (MQ=255) gCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGTTTGACCGGATTGTGGATGATCTGCAGCATCGCCTcgccgc < 1:164890/149‑1 (MQ=255) gCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGGTTGCCCGGCTTGTGGATGATCTGCAGCAtc > 1:124393/1‑139 (MQ=255) gCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGGTTGCCCGGCTTGTGGATGATCTGCAGCAtc < 2:124393/139‑1 (MQ=255) cTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGt > 6:98030/1‑88 (MQ=255) cTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGt < 5:98030/88‑1 (MQ=255) | CTTCGCCAAGGGCCTGGTAGACCTCGAAGAAATCGTTCATCAACAGCGAGCGGCACCAGGCATCGATAAGGATGTGGTGGTTGCTCATCATGAACCAGTAGCGTTCCTCGGCCAC‑‑GCGCACCAGGCGCAGGTGGAACGGTGCCTCGCTGAGCAAGGCAAAGCCGGCCTCGCGCTCCTGCTTGTGCAGGGCCTGCAGGCGCTGCTCCTGGGCATCGTCGGCCAGGCCGCGCCAGTCCTGGTAGTCCACCGCCAGGTTGCCCGGCTTGTGGATGATCTGCAGCATCGCCTCGCCGC > NC_002947/4820986‑4821279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |