Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,858,520 | G→T | 7.8% | intergenic (‑26/+199) | PP_mr50 ← / ← ligA | Bacteria_large_SRP ncRNA/DNA ligase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,858,520 | 0 | G | T | 7.8% | 160.8 / 3.3 | 51 | intergenic (‑26/+199) | PP_mr50/ligA | Bacteria_large_SRP ncRNA/DNA ligase |
Reads supporting (aligned to +/- strand): ref base G (24/23); new base T (2/2); total (26/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 |
CGACCCCAGAAATGGAGGCGGCCCCACCAGCCACACCCCGGCACTCGATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCA > NC_002947/4858377‑4858666 | cGACCCCAGAAATGGAGGCGGCCCCACCAGCCACACCCCGGCACTCGATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAAAGCGCGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGagcagc > 4:56813/1‑148 (MQ=255) gACCCCAGAAATGGAGGCGGCCCCACCAGCCACACCCCGGCACTCGATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGCCCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGagcagc > 8:116426/1‑147 (MQ=255) gACCCCAGAAATGGAGGCGGCCCCACCAGCCACACCCCGGCACTCGATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGagcagc > 8:325072/1‑147 (MQ=255) gACCCCAGAAATGGAGGCGGCCCCACCAGCCACACCCCGGCACTCGATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGagcagc > 6:342144/1‑147 (MQ=255) cccAGAAATGGAGGCGGCCCCACCAGCCACACCCCGGCACTCCATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTg > 1:358578/1‑149 (MQ=255) aGAAATGGAGGCGGCCCCACCAGCCACACCCCGGCACTCGATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGgcg > 5:368755/1‑149 (MQ=255) tGGAGGCGGCCCCACCAGCCACACCCCGGCACTCGATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGTGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCAtt < 8:161210/149‑1 (MQ=255) gcggcCCCACCAGCCACACCCCGGCACTCGATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACATCGTCTCGCTGAGCAGCGAGTGGCGCCATTGTAc < 1:45765/149‑1 (MQ=255) gcggcCCCACCAGCCACACCCCGGCACTCGATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGagc > 6:196659/1‑128 (MQ=255) ggcCCCACCAGCCACACCCCGGCACTCGATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCgg > 6:295908/1‑149 (MQ=255) caGCCACACCCCGGCACTCGATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTg > 7:182132/1‑147 (MQ=255) gCCACACCCCGGCACTCGATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGc < 6:368755/149‑1 (MQ=255) ccACACCCCGGCACTCGATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCa < 8:182132/149‑1 (MQ=255) aaacCCCGGACTTCTATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGTGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGa < 1:320633/147‑1 (MQ=255) cccGGCACTCGATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAg < 2:370370/141‑1 (MQ=255) cccGGCACTCGATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAg > 1:370370/1‑141 (MQ=255) tCGATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGc > 8:6504/1‑149 (MQ=255) cGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCa < 7:104261/143‑1 (MQ=255) cGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCa > 8:104261/1‑143 (MQ=255) ggCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGtcat < 2:358578/148‑1 (MQ=255) gctgctCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGtcatca < 7:211588/149‑1 (MQ=255) tCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTtct > 3:101787/1‑149 (MQ=255) cccTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACAGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTtct > 8:173274/1‑148 (MQ=255) ccTTCCGGGCCTGACCAGGTTAACGGGTAATCTATGCGGGGGGACCGATGGGGCCACCACTACTT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTtctc < 3:56813/148‑1 (MQ=255) cTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCaa < 5:342144/149‑1 (MQ=255) cTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCaa < 7:325072/149‑1 (MQ=255) ggCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACtt < 5:295908/149‑1 (MQ=255) gCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTg > 5:221391/1‑149 (MQ=255) aCCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAgg > 2:90278/1‑149 (MQ=255) ccAGGTTAACGGGTAATCAATGCGGGTGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAgg < 7:173274/148‑1 (MQ=255) cAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGtcat > 8:21817/1‑125 (MQ=255) cAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGtcat < 7:21817/125‑1 (MQ=255) ggTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCg > 7:90308/1‑82 (MQ=255) ggTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCg < 8:90308/82‑1 (MQ=255) gTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCg < 4:101787/148‑1 (MQ=255) ggTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGa > 2:333492/1‑83 (MQ=255) tCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGa < 7:158056/78‑1 (MQ=255) tCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGa > 8:158056/1‑78 (MQ=255) aaTGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACgg > 5:169421/1‑149 (MQ=255) aaTGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACgg > 2:73157/1‑149 (MQ=255) aaTGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACg < 7:6504/148‑1 (MQ=255) gggggACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGCctct < 1:73157/149‑1 (MQ=255) ggACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGCCTCTTcg > 7:85912/1‑149 (MQ=255) cGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGCCTCTTCGCggg > 1:96813/1‑149 (MQ=255) cGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTAGAGATGGCCTGGACGGGCCTCTTCGCggg > 2:255695/1‑149 (MQ=255) gggCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGCCTCTTCGCGGGTAAAc < 8:84779/149‑1 (MQ=255) ggCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGCCTCTTCGCGGGTAAAcc > 4:3887/1‑149 (MQ=255) accacTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGCCTCTTCGCGGGTAAACCCGCt > 7:293719/1‑149 (MQ=255) ccacTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGCCTCTTCGCGGGTAAACCCGCTc < 3:3887/149‑1 (MQ=255) gccactcGCTGCTCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCAAGATGGCCt > 1:341956/5‑112 (MQ=255) gccactcGCTGCTCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCAAGATGGCCt < 2:341956/108‑1 (MQ=255) ccactcGCTGCTCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTtct < 1:89192/80‑1 (MQ=255) ccactcGCTGCTCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTtct > 2:89192/4‑83 (MQ=255) tctcGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGa > 1:318303/1‑149 (MQ=255) gCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGACcg < 6:169421/148‑1 (MQ=255) gAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGACcgcg > 4:36969/1‑147 (MQ=255) agcagcGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCa < 6:221391/148‑1 (MQ=255) | CGACCCCAGAAATGGAGGCGGCCCCACCAGCCACACCCCGGCACTCGATGTTCCCGCTATGGCTGCTCCCTTCCGGGCCTGACCAGGTTAACGGGTAATCAATGCGGGGGGACCGATGGGGCCACCACTACAT‑GTCTCGCTGAGCAGCGAGTGGCGCCATTGTACCGGTCTTTGGAGCAGATACAACCACTGCGGCAGAAAAAGTCATCATTTCTCAATGACTTGTCAGGGTCGAGATGGCCTGGACGGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCGCA > NC_002947/4858377‑4858666 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |