| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,936,630 | G→C | 6.6% | intergenic (‑41/‑377) | flhA ← / → PP_4345 | flagellar export pore protein/GntR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,936,630 | 0 | G | C | 6.6% | 290.1 / 8.0 | 91 | intergenic (‑41/‑377) | flhA/PP_4345 | flagellar export pore protein/GntR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (48/37); new base C (3/3); total (51/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.43e-01 | |||||||||||
CATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATCGCCTCTACGG > NC_002947/4936482‑4936778 | catcatcatTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGgcg > 6:322776/1‑149 (MQ=34) atcatcatTGCCAACATCACCAGTAGCAACAGCGGCACCCCCAGGTTGCCCGGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGgcgc < 1:311207/149‑1 (MQ=21) atcatcatTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGgcgc > 6:339712/1‑149 (MQ=34) tcatcatTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGcc > 3:308100/1‑149 (MQ=34) catcatTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCt > 5:37792/1‑149 (MQ=34) tcatTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTgg > 1:372480/1‑149 (MQ=35) atTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGc < 7:43123/149‑1 (MQ=37) cAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGTGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGc > 2:108272/1‑149 (MQ=255) cAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCA‑GGGGCGCCTGGGCGTGGCt > 4:182357/1‑149 (MQ=255) cAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATCCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGc > 4:2973/1‑149 (MQ=255) aaCATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGCGCCCCCTGGGCGtcaaa < 8:79696/149‑5 (MQ=255) cctCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCttt < 5:322776/147‑1 (MQ=255) cATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCttt > 4:44071/1‑149 (MQ=255) cATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGCGCCCCCTGGGCGtcaaagt > 1:378617/1‑143 (MQ=11) cACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGc > 1:97102/1‑148 (MQ=255) aCCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCa < 2:372480/148‑1 (MQ=255) ccAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGc > 3:147294/1‑146 (MQ=255) agcaACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCt > 8:302149/1‑149 (MQ=255) agcaACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTATGCATGAAGCt > 8:136290/1‑149 (MQ=255) gcaACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCtt < 5:83297/149‑1 (MQ=255) gcaACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCtt > 5:339705/1‑149 (MQ=255) aGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCtttgc > 3:239849/1‑145 (MQ=255) aGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCaa > 6:345267/1‑149 (MQ=255) gCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGTGTCCTCTTCTATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCaa < 1:108272/149‑1 (MQ=255) ggCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACtt > 2:188222/1‑149 (MQ=255) gCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACttt < 4:239849/149‑1 (MQ=255) aCCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTgg < 1:370504/149‑1 (MQ=255) cccccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTgg > 2:101233/1‑148 (MQ=255) ccccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCCCCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTgg > 8:83362/1‑147 (MQ=255) ccccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTgg > 6:362550/1‑147 (MQ=255) ccccAGGTTGCCCCGGCCGAGCCCGGCCAGGGTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGCAGCATTCCAACTTTgg > 8:88701/1‑147 (MQ=255) cccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTgg > 4:198196/1‑146 (MQ=255) ccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGa > 7:170644/1‑149 (MQ=255) cccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCt > 8:5859/1‑124 (MQ=255) cccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCt < 7:5859/124‑1 (MQ=255) cccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACAccc < 3:220122/145‑1 (MQ=255) cccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACAccc > 4:220122/1‑145 (MQ=255) ccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGCGCCCCCTGGGCGtcaaa < 2:279186/111‑5 (MQ=11) ccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGCGCCCCCTGGGCGtcaaa > 1:274034/1‑107 (MQ=11) ccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGCGCCCCCTGGGCGtcaaa < 2:274034/111‑5 (MQ=11) ccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGCGCCCCCTGGGCGtcaaa > 1:279186/1‑107 (MQ=11) gCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGaaa < 3:2973/149‑1 (MQ=255) gCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGaa > 8:290631/1‑148 (MQ=255) gAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGa < 1:173539/149‑1 (MQ=255) aGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGAt < 5:345267/149‑1 (MQ=255) gCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATg < 3:44071/149‑1 (MQ=255) ccGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGaa < 6:221738/149‑1 (MQ=255) gCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCg > 4:350898/1‑149 (MQ=255) ccAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCgg < 7:191518/149‑1 (MQ=255) ccAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCgg < 5:362550/149‑1 (MQ=255) gttgttGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGa < 4:308100/149‑1 (MQ=255) cGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACcgcg < 1:101233/149‑1 (MQ=255) ttGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGtt < 7:290631/149‑1 (MQ=255) cTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGAc < 4:147294/149‑1 (MQ=255) tGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGTGCGAGCACCACCGCGTTGACg > 7:321125/1‑149 (MQ=255) gATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCATGGGCGTGGCTTTGCAAGAAGCTTACCAAATTTGGCAGACCCCCCCCCGAAAACATGACCCGGGCGAGCCCCACcgcggggcggg > 7:239637/1‑142 (MQ=18) gATTAACTGAGTGCGATCAACCGCGAGTCCAATT‑TATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCACCACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACgt > 8:6091/1‑148 (MQ=25) aTTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACggg > 8:286085/1‑149 (MQ=255) aTTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACggg < 6:339705/149‑1 (MQ=255) aCTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTgg < 8:170644/148‑1 (MQ=255) cTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCt > 3:163058/1‑149 (MQ=255) tGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACAcc > 2:58338/1‑100 (MQ=255) tGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACAcc < 1:58338/100‑1 (MQ=255) tGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGaaaa > 5:96392/1‑110 (MQ=255) tGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGaaaa < 6:96392/110‑1 (MQ=255) aGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCAt < 4:163058/149‑1 (MQ=255) cGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACACCCGCGTTGACGGGTGGCTAATGag > 6:241698/1‑148 (MQ=255) gATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGagc > 4:146235/1‑148 (MQ=255) gATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCA‑GGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGagcaa < 3:182357/149‑1 (MQ=255) ccccGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGagcaagca < 7:83362/147‑1 (MQ=255) cACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCTGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCTTGagcaagc > 2:275571/1‑148 (MQ=255) cACCGCGAGTCCTATT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGGTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGagcaagca < 7:88701/149‑1 (MQ=255) aCCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAgcaagcaa < 2:97102/149‑1 (MQ=255) cgcgAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATc < 7:302149/149‑1 (MQ=255) cgAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCAc < 6:37792/149‑1 (MQ=255) ctctT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGa > 8:185196/1‑148 (MQ=255) tctT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGaa > 2:25153/1‑148 (MQ=255) gATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAgcaagcaa > 8:195430/1‑134 (MQ=255) gATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAgcaagcaa < 7:195430/134‑1 (MQ=255) gATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAAc > 3:91599/1‑148 (MQ=255) aTGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAAc > 4:3594/1‑147 (MQ=255) tGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACga < 7:185196/148‑1 (MQ=255) tGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACga < 1:188222/148‑1 (MQ=255) gCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACgag < 3:198196/148‑1 (MQ=255) gCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAACCAATCACCAAGAAAAACgaga > 8:351679/1‑149 (MQ=255) cAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGAc > 5:153798/1‑149 (MQ=255) cAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGAc < 6:153798/149‑1 (MQ=255) aaaaCTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAATCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGAcc > 1:270457/1‑149 (MQ=255) aaCTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTc > 4:15158/1‑149 (MQ=255) tttGCCGCCCAGGGGGCGCCTGGGCTTGGCTTTGCAAGACGCTTTCCAACTTTGGCAGACACCCACACGAAAAGCTGTACCGGGCGAGCACCACCGCGTTGTCGGGTGGCTCATGAGCAAGCAATc < 6:272527/126‑1 (MQ=255) tGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGcc > 6:96895/1‑149 (MQ=255) gCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGCGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAAt > 5:327240/1‑149 (MQ=255) ccAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGTCGAGCACCACCGCCTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCGCCCGCCCAATCg > 8:257846/1‑149 (MQ=255) aGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATCGcc > 7:259723/1‑149 (MQ=255) gcCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGGTGACGGGTGGCTCATGAGCTAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATCGCCTCTACgg < 1:275571/149‑1 (MQ=255) | CATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTT‑GATGCAAAACTTTGACGCCCAGGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATGAACCGGGCGAGCACCACCGCGTTGACGGGTGGCTCATGAGCAAGCAATCACCAAGAAAAACGAGACCTCCCGCCCAATCGCCTCTACGG > NC_002947/4936482‑4936778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |