Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,003,010 | A→G | 6.4% | T265T (ACA→ACG) | PP_4409 → | site‑specific recombinase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,003,010 | 0 | A | G | 6.4% | 180.6 / 2.7 | 62 | T265T (ACA→ACG) | PP_4409 | site‑specific recombinase |
Reads supporting (aligned to +/- strand): ref base A (27/31); new base G (2/2); total (29/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.26e-01 |
ACTGGACAAGGTTACCGACCTCATCACCAAGGCAAGCTGCTATCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGAATGGAAGGGTCGGGGCACCCCACTTACCATTATGCTGGAACCTTATGCCAGCCTCT > NC_002947/5002878‑5003158 | aCTGGACAAGGTTACCGACCTCATCACCAAGGCAAGCTGCTATCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTc < 5:157009/149‑1 (MQ=255) gACAAGGTTACCTACCTCATCACCAAGGCAAGCTGCTATCGAAACTAATGTTTCTACGCACTTATTGCAGCAACAAATTCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGt < 5:273433/149‑1 (MQ=255) gACAAGGTTACCGACCTCATCACCAAGGCAAGCTGCTATCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAAAACTGTGGCGCGACATAAACTTCTCGTGATGTGAAGtttatgtcgc < 1:270611/149‑8 (MQ=255) aCAAGGTTACCGACCTCATCACCAAGGCAAGCTGCTATCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGt > 3:346796/1‑148 (MQ=255) aCAAGGTTACCGACCTCATCACCAAGGCAAGCTGCTATCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGAGCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTc < 7:342501/149‑1 (MQ=255) aCCGACCTCATCACCAAGGCAAGCTGCTATCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCTCGTGATGTGAAGtttat < 1:116335/135‑3 (MQ=255) aCCGACCTCATCACCAAGGCAAGCTGCTATCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCTCGTGATGTGAAGtttat > 2:116335/1‑133 (MQ=255) cGACCTCATCACCAAGGCAAGCTGCTATCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTg > 6:166379/1‑137 (MQ=255) cGACCTCATCACCAAGGCAAGCTGCTATCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTg < 5:166379/137‑1 (MQ=255) atcaCCAAGGCAAGCTTCTATCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCTCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGAc < 1:366723/148‑1 (MQ=255) aCCAAGGCAAGCTGCTATCGAAACTCATGTTTCTACGCACTTATTGCAGCAACTAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCaa > 3:280742/1‑149 (MQ=255) ccAAGGCAAGCTGCTATCGAACCTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGGGCAATTCTGAAGCTGATCAAAAACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTGTTGTCAACCCCCAAACCCGACTAAAt > 3:306810/1‑149 (MQ=255) ccAAGGCAAGCTGCTATCGAAACTCATGATTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACACGACTCAAt > 7:150916/1‑149 (MQ=255) gccAAGCTGCTATCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTg < 5:333506/147‑1 (MQ=255) aaGCTGCTATCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTgg > 1:147062/1‑147 (MQ=255) aaGCTGCTATCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTgg < 2:147062/147‑1 (MQ=255) gctATCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCt > 1:12773/1‑149 (MQ=255) ctATCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGc < 4:346796/147‑1 (MQ=255) aTCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTAt > 2:131551/1‑149 (MQ=255) tCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATc > 2:180396/1‑149 (MQ=255) gAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTAATGCTTATCGt < 3:170233/149‑1 (MQ=255) aaaCTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTg > 7:300618/1‑149 (MQ=255) aaaCTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTg < 7:345613/149‑1 (MQ=255) aaaCTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTg > 1:322684/1‑149 (MQ=255) aaCTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTgg > 5:64804/1‑149 (MQ=255) aaCTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTgg < 1:281456/149‑1 (MQ=255) aTGATTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGa < 8:150916/149‑1 (MQ=255) cGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGaaa < 5:154790/146‑1 (MQ=255) cGCACTTACTCCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATCCTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATc < 4:306810/148‑1 (MQ=255) aCTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTg < 6:149669/116‑1 (MQ=255) aCTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTg > 5:149669/1‑116 (MQ=255) aCTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTg < 6:176178/131‑1 (MQ=255) aCTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTg > 5:176178/1‑131 (MQ=255) aCTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGt > 5:157503/1‑139 (MQ=255) aCTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGt < 6:157503/139‑1 (MQ=255) aCTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGc > 7:132272/1‑149 (MQ=255) aTTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGaa > 4:175899/1‑148 (MQ=255) ttGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGaaac < 8:132272/149‑1 (MQ=255) ttGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGaaac < 2:322684/149‑1 (MQ=255) ttGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGGGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGaaa < 2:50663/148‑1 (MQ=255) caacaaATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTc < 1:131551/149‑1 (MQ=255) caaATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGaa < 4:280742/149‑1 (MQ=255) cgcgcAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGAATgg > 2:361450/1‑146 (MQ=255) cgcgcAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGAATGGaa < 1:361450/148‑1 (MQ=255) gcgcAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAAACCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGACACCAACTCGAATGGCAgg > 4:295193/1‑149 (MQ=255) aaGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTgg > 8:16761/1‑85 (MQ=255) aaGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTgg < 7:16761/85‑1 (MQ=255) aTCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGa < 2:295666/109‑1 (MQ=255) aTCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGa > 1:295666/1‑109 (MQ=255) tCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGAATGGAAGGGTCGGGGCACCCCACTTa > 7:323416/1‑149 (MQ=255) aaTACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGAATGGAAGGGTCGGGGCACCCCACTTACCa > 1:170842/1‑149 (MQ=255) tgGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGAATGGAAGGGTCGGGGCACCCCACTTACCATTATGCt > 5:127599/1‑149 (MQ=255) gcgcGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGAATGGAAGGGTCGGGGCACCCCACTTACCATTATGCTg < 6:64804/148‑1 (MQ=255) gcgACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGAATGGAAGGGTCGGGGCACCCCACTTACCATTATGCTGGa < 2:6029/148‑1 (MQ=255) gcgACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGAATGGAAGGGTCGGGGCACCCCACTTACCATTATGCTGGa > 1:6029/1‑148 (MQ=255) aagaaaaaCTTCTCGTGATGTGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGAATGGAAGGGTCGGGGCACCCCACTTACCATTATGCTGGAAcc > 3:101736/6‑149 (MQ=255) aCATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGAATGGAAGGGTCGGGGCACCCCACTTa < 7:329310/132‑1 (MQ=255) cATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGAATGGAAGGGTCGGGGCACCCCACTTACCATTATGCTGGAACCtt < 6:127599/149‑1 (MQ=255) aTAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAAAAAACTAGAATGGAAGGGTCGGGGCACACACCTTACCATTATGAGGGAACATTa > 5:343172/1‑149 (MQ=255) tAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGAATGGAAGGGTCGGGGCACCCCACTTACCATTATGCTGGAACCTTAt > 2:117528/1‑149 (MQ=255) aaaCTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGAATGGAAGGGTCGGGGCACCCCACTTACCATTATGCTGGAACCTTATg < 8:300618/149‑1 (MQ=255) aaCTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGAATGGAAGGGTCGGGGCACCCCACTTACCATTATGCTGGAACCTTATGc < 3:175899/149‑1 (MQ=255) aTCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGAATGGAAGGGTCGGGGCACCCCACTTACCATTATGCTGGAACCTTATGCCAGCctct > 2:354616/1‑149 (MQ=255) | ACTGGACAAGGTTACCGACCTCATCACCAAGGCAAGCTGCTATCGAAACTCATGTTTCTACGCACTTATTGCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCATACCCGACTCAATCCTGGTGATGCTTATCGTGGGCTGAGTGAAATCGAGCGAAACAAACTCGAATGGAAGGGTCGGGGCACCCCACTTACCATTATGCTGGAACCTTATGCCAGCCTCT > NC_002947/5002878‑5003158 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |