Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 385,477 | G→T | 8.7% | intergenic (+17/+18) | PP_0320 → / ← ltaE | methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 385,477 | 0 | G | T | 8.7% | 138.5 / 4.1 | 46 | intergenic (+17/+18) | PP_0320/ltaE | methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase |
Reads supporting (aligned to +/- strand): ref base G (27/15); new base T (2/2); total (29/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.19e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.51e-01 |
CAGGGGATTTCCGATTTGGCGCGTGAGACGGCGGCGGAGGTGCAAGGGTGCCGCGAGGAGTGCCAGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGCCGATAAAGGTATAGAAGCGCCAGCCCTTGCCCCG > NC_002947/385338‑385623 | cAGGGGATTTCCGATTTGGCGCGTGAGACGGCGGCGGAGGTGCAAGGGTGCCGCGAGGAGTGCCAGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCg > 7:147876/1‑149 (MQ=255) cAGGGGATTTCCGATTTGGCGCGTGAGACGGCGGCGGAGGTGCAAGGGTGCCGCGAGGAGTGCCAGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCg > 8:39454/1‑149 (MQ=255) aGGGGATTTCCGATTTGGCGCGTGAGACGGCGGCGGAGGTGCAAGGGTGCCGCGAGGAGTGCCAGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCgg < 7:39454/149‑1 (MQ=255) aGGGGATTTCCGATTTGGCGCGTGAGACGGCGGCGGAGGTGCAAGGGTGCCGCGAGGAGTGCCAGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGAAGGGGCCGCACGGCGGCCCCgg > 3:6562/1‑149 (MQ=255) ggggAGTTGCGCTTTGGCGCGGGAGTCGTCGGCGGAGGTGTAAGGGTGCCGCGAGGAGGGACAGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGGGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCCGTGCGGCCCCTGc < 8:265269/149‑1 (MQ=255) gggATTTCCGATTTGGCGCGTGAGACGGCGGCGGAGGTGCAAGGGTGCCGCGAGGAGTGCCAGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGct > 5:158197/1‑149 (MQ=255) gggATTTCCGAGTTGGCGCGTGAGACGGCGGCGTAGGTGCAAGGGTGCCGCGAGGAGTGCCAGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGTGGG‑TGCAGGCTCTAGATCGCAGGGGCCGCCGTGCGGCCCCTGc < 6:253319/148‑1 (MQ=255) ccGATTTGGCGCGTGAGACGGCGGCGGAGGTGCAAGGGTGCCGCGAGGAGTGCCAGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCt < 6:150910/148‑1 (MQ=255) cGATTTGGCGCGTGAGACGGCGGCGGAGGTGCAAGGGTGCCGCGAGGAGTGCCAGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCTGCTCTCGCTc < 4:113969/148‑1 (MQ=255) tGAGACGGCGGCGGAGGTGCAAGGGTGCCGCGAGGAGTGCCAGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGAt > 1:291667/1‑149 (MQ=255) gaCGGCGGCGGAGGTGCAAGGGTGCCGCGAGGAGTGCCAGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCTGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGt > 5:144538/1‑149 (MQ=255) tGCAAGGGTGCCGCGAGGAGTGCCAGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATccgccg < 6:158197/149‑1 (MQ=255) gCAAGGGTGCCGCGAGGAGTGCCAGGCGTTGCGTGGGTTGGCTGATGACCTGGGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATccgccg > 1:94036/1‑149 (MQ=255) gCAAGGGTGCCGCGAGGAGTGCCAGGCGTTGCGTGGGTGGGCTGATGACCT‑GGCGCGGCAGATGGGTGGG‑GTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGGCACCAATGATCGTGCGGATATCcgccgc < 5:293407/149‑1 (MQ=255) gggCCGCGAGGAGTGCCAGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTc < 5:388785/147‑1 (MQ=255) tGCCGCGAGGAGTGCCAGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCa < 8:284503/149‑1 (MQ=255) ggagTGCCAGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGGGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCcg < 1:198792/149‑1 (MQ=255) aGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGTGGGCTTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGcttct > 1:84025/1‑149 (MQ=255) gCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATc > 1:13873/1‑149 (MQ=255) tgatgaCCT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACAt > 8:242122/1‑149 (MQ=255) tgatgaCCT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACAt > 8:242123/1‑149 (MQ=255) ccT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAgcg < 2:13873/149‑1 (MQ=255) cT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAgcgc > 1:163529/1‑149 (MQ=255) aGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGc > 5:349957/1‑149 (MQ=255) tgggtggg‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCg < 5:369332/112‑1 (MQ=255) tgggtggg‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCg > 6:369332/1‑112 (MQ=255) gggtggg‑tTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGTGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGcc > 4:128908/1‑149 (MQ=255) ggtggg‑tTCAGTCTATATATCGCAGCGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGcc < 4:6562/148‑1 (MQ=255) ttCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGCCGATAAAg > 7:123412/1‑149 (MQ=255) cAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCg < 2:35673/135‑1 (MQ=255) cAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCg > 1:35673/1‑135 (MQ=255) tctAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGCCGATAAAGGTATAg > 8:183722/1‑148 (MQ=255) tctAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGCCGATAAAGGTATAg > 7:65923/1‑148 (MQ=255) tAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGCCGATAAAGGTATAGAAg > 3:98252/1‑149 (MQ=255) gATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGTGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGCCGATAAAGGTATAGaa < 3:128908/146‑1 (MQ=255) gATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCAc > 6:50536/1‑124 (MQ=255) agccggggCCGCCGTGCGGCCCCTGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGCCGATAAAGGTATAGAAgcgc > 1:236319/5‑147 (MQ=255) gCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGCCGATAAAGGTATAGAAGCGCCAg > 5:192400/1‑149 (MQ=255) gCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTACTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGCCGATAAAGGTATAGAAGCGCCAg > 5:187006/1‑149 (MQ=255) cggggCCGCCGTGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGCCGATAAAGGTATAGAAGCGCCAGcc > 6:363793/2‑149 (MQ=255) aGGGGCCTCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGCCGATAAAGGTATAGAAGCGCCAGcc < 8:58580/149‑1 (MQ=255) aGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGCCGATAAAGGTATAGAAGCGCCAGcc > 6:113641/1‑149 (MQ=255) gtcGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGCCGATAAAGGTATAGAAGCGCCAGCCCTTg > 3:165349/3‑149 (MQ=255) cGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGCCGATAAAGGTATAGAAGCGCCa > 7:290079/1‑140 (MQ=255) cGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGCCGATAAAGGTATAGAAGCGCCa < 8:290079/140‑1 (MQ=255) aCGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGCCGATAAAGGTATAGAAGCGCCAGCCCTTGCCCCg > 5:129826/1‑149 (MQ=255) | CAGGGGATTTCCGATTTGGCGCGTGAGACGGCGGCGGAGGTGCAAGGGTGCCGCGAGGAGTGCCAGGCGTTGCGTGGGTTGGCTGATGACCT‑GGCGCGGCAGATGGGTGGG‑TTCAGGCTCTAGATCGCAGGGGCCGCACGGCGGCCCCGGCTCTCGCTCAGCCACCAATGATCGTGCGGATATCCGCCGCCAGCTCACGCACCCGCGCTTCTTCGGTATCCCACGAGCACATGAAGCGCGCGCCACCGCTGCCGATAAAGGTATAGAAGCGCCAGCCCTTGCCCCG > NC_002947/385338‑385623 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |