Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 427,753 | G→T | 10.3% | L16M (CTG→ATG) ‡ | PP_0350 ← | ferrichrome‑iron receptor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 427,753 | 0 | G | T | 10.3% | 173.8 / 10.2 | 58 | L16M (CTG→ATG) ‡ | PP_0350 | ferrichrome‑iron receptor |
Reads supporting (aligned to +/- strand): ref base G (25/27); new base T (4/2); total (29/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.70e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.38e-01 |
GATGGCCAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTATT > NC_002947/427607‑427892 | gATGGCCAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAggg < 2:217244/149‑1 (MQ=255) cAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTg < 8:159518/149‑1 (MQ=255) cAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTg < 6:75415/149‑1 (MQ=255) aaTGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCGGGCTgg < 6:176141/149‑1 (MQ=255) aTGCCGGCCGGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTggg < 8:226907/149‑1 (MQ=255) tGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCAAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTgggg > 1:192649/1‑149 (MQ=255) gCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGgc > 4:158197/1‑149 (MQ=255) ggCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGgcg > 5:332864/1‑147 (MQ=255) ggCCGGGCTGGCGAGCGGGTGGAGGGTGGTGGCCAGGGGCGCGCGGGGCAGGGGGGAGGCGCGCGACGTGGATTGCGCGGCGGCGACCACGGCCGGGCTGGGCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCGGGGGCGCa < 3:210830/149‑1 (MQ=255) gCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAg > 3:176456/1‑149 (MQ=255) gctggcGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGata < 8:294005/148‑1 (MQ=255) gTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCAc > 6:226531/1‑149 (MQ=255) ttGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTggg > 4:141454/1‑125 (MQ=255) ttGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTggg < 3:141454/125‑1 (MQ=255) ttGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACg > 2:343622/1‑149 (MQ=255) ggtggtGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAg > 7:153689/1‑126 (MQ=255) ggtggtGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAg < 8:153689/126‑1 (MQ=255) ggtggtGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGAc < 2:160673/148‑1 (MQ=255) ccAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGcggcgg > 1:123187/1‑149 (MQ=255) gcgcTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGa > 4:115792/1‑149 (MQ=255) gTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGtgc > 3:286588/1‑149 (MQ=255) ggCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCt < 5:349004/129‑1 (MQ=255) ggCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCt > 6:349004/1‑129 (MQ=255) ggCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTtgctg > 1:244314/1‑149 (MQ=255) cgcgACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTc < 8:93013/149‑1 (MQ=255) cgcgACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTc < 3:156977/149‑1 (MQ=255) cgcgACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTc < 3:115792/149‑1 (MQ=255) tGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCcg < 5:226531/149‑1 (MQ=255) gATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCcgag > 3:42423/1‑149 (MQ=255) ttGCTCGGCGGCGAACAAGGCGGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCcgagc > 2:181505/1‑148 (MQ=255) tCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATc < 3:229314/83‑1 (MQ=255) tCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATc > 4:229314/1‑83 (MQ=255) gcggcgAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCtt > 1:157070/1‑134 (MQ=255) gcggcgAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCtt < 2:157070/134‑1 (MQ=255) cAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGAACAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGa > 1:308359/1‑149 (MQ=255) gCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGtgcttgc > 2:205798/1‑113 (MQ=255) gCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGtgcttgc < 1:205798/113‑1 (MQ=255) gCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAgg < 2:192649/149‑1 (MQ=255) gCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAgg < 2:244314/149‑1 (MQ=255) aGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGt < 1:343622/149‑1 (MQ=255) ggCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGc < 8:130295/120‑1 (MQ=255) ggCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGc > 7:130295/1‑120 (MQ=255) ggCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGa < 4:286588/149‑1 (MQ=255) cTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAAt > 1:170031/1‑149 (MQ=255) tCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTg > 2:284717/1‑148 (MQ=255) aGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACgg < 2:185511/89‑1 (MQ=255) aGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACgg > 1:185511/1‑89 (MQ=255) aGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGaa < 2:170031/148‑1 (MQ=255) ccAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTgag > 1:25362/1‑148 (MQ=255) gCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAatta < 3:158197/149‑1 (MQ=255) ctgATGGCCCTGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGtgcttgc > 7:362735/3‑86 (MQ=255) ctgATGGCCCTGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCcgagc < 6:34720/100‑1 (MQ=255) ctgATGGCCCTGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCcgagc > 5:34720/3‑102 (MQ=255) ccGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAattat > 5:304682/1‑149 (MQ=255) tgATGGCCCTGGCCATCGGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAattatt > 5:186489/2‑149 (MQ=255) tgATGGCCCTGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCcgagcg > 1:248126/2‑102 (MQ=255) tgATGGCCCTGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCcgagcg < 2:248126/101‑1 (MQ=255) cGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAattatt < 2:123187/149‑1 (MQ=255) cGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAattatt < 4:176456/149‑1 (MQ=255) | GATGGCCAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGATGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTATT > NC_002947/427607‑427892 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |