Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,226,653 | T→A | 6.5% | intergenic (+15/+15) | PP_4605 → / ← PP_4606 | AraC family transcriptional regulator/ferric siderophore receptor |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,226,653 | 0 | T | A | 6.5% | 188.6 / 2.6 | 61 | intergenic (+15/+15) | PP_4605/PP_4606 | AraC family transcriptional regulator/ferric siderophore receptor |
Reads supporting (aligned to +/- strand): ref base T (25/32); new base A (2/2); total (27/34) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.55e-01 |
GCGGCTGGGAGTAATGCCGCTGGGAGAGATTGCCTTATTGTGCGGGTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCACCGCCGAGCTGTAATACACCTTGTCGAACAGGTTCTTCACGTTCAGTTGCA > NC_002947/5226506‑5226786 | gCGGCTGGGAGTAATGCCGCTGGGAGAGATTGCCTTATTGTGCGGGTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTg > 8:288958/1‑149 (MQ=255) cGGCTGGGAGTAATGCCGCTGGGAGAGATTGCCTTATTGTGCGGGTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTg < 7:288958/148‑1 (MQ=255) cGGCTGGGAGTAATGCCGCTGGGAGAGATTGCCTTATTGTGCGGGTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGc < 7:327403/149‑1 (MQ=255) ggCTGGGAGTAATGCCGCTGGGAGAGATTGCCTTATTGTGCGGGTTTGCCAGTGCCATCCATTTCAGCATCCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGc < 3:52110/148‑1 (MQ=255) tGGGAGTAATGCCGCTGGGAGAGATTGCCTTATTGTGCGGGTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGcc > 3:177061/1‑149 (MQ=255) ggAGTAATGCCGCTGGGAGAGATTGCCTTATTGTGCGGGTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCAGAGCGGcccc < 6:204914/149‑1 (MQ=255) aTGCCGCTGGGAGAGATTGCCTTATTGTGCGGGTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGc < 4:66930/149‑1 (MQ=255) cTGGGAGAGATTGCCTTATTGTGCGGGTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTaaaa < 2:354372/149‑1 (MQ=255) agaTTGCCTTATTGTGCGGGTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAg < 1:80179/149‑1 (MQ=255) aTTGCCTTATTGTGCGGGTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGt > 7:106748/1‑149 (MQ=255) ccTTATTGTGCGGGTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAg > 8:228690/1‑143 (MQ=255) ccTTATTGTGCGGGTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAg < 7:228690/143‑1 (MQ=255) ccTTATTGTGCGGGTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTc < 8:310354/149‑1 (MQ=255) tATTGTGCGGGTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGa > 4:130872/1‑148 (MQ=255) tgCGGGTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCAGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACt > 5:327721/1‑149 (MQ=255) cGGGTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGa < 2:190601/149‑1 (MQ=255) gggTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGAc < 4:177061/149‑1 (MQ=255) gggTGTGCCAGTGCCAGCCATTTCAGCAACCGGGTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGAc < 8:132918/149‑1 (MQ=255) gtgccagCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCg < 5:378947/98‑1 (MQ=255) gtgccagCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCg > 6:378947/1‑98 (MQ=255) ccagccaTTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCatcg > 8:255559/1‑149 (MQ=255) ccagccaTTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCAGAGCGGccccgg < 2:130593/102‑3 (MQ=255) ccagccaTTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCAGAGCGGccccgg > 1:130593/1‑100 (MQ=255) cagccaTTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCatcgc > 2:294776/1‑149 (MQ=255) agccaTTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCatcgcc < 6:379595/149‑1 (MQ=255) aTTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCatcgccaa > 6:15846/1‑147 (MQ=255) tCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCatcgccaatcgc > 8:355161/1‑148 (MQ=255) aaCCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCatcgc < 3:252930/136‑1 (MQ=255) aaCCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCatcgc > 4:252930/1‑136 (MQ=255) aCCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACaaac > 5:353177/1‑148 (MQ=255) ccGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAg > 6:60127/1‑148 (MQ=255) cGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGt > 5:340208/1‑104 (MQ=255) cGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGt < 6:340208/104‑1 (MQ=255) gTTTCGCCAAGCCCTGGGGGCCACACCTCGCGCATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACt > 5:371673/1‑149 (MQ=255) tttCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTg < 7:355161/149‑1 (MQ=255) tCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTgg < 3:130872/148‑1 (MQ=255) tCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTgg < 7:255559/148‑1 (MQ=255) ggggCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCACCGCCGAGCt > 6:338505/1‑149 (MQ=255) ccACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCACCGCCGAGCTGTaa > 7:59274/1‑149 (MQ=255) cacaCCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTg > 5:79214/1‑129 (MQ=255) cacaCCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTg < 6:79214/129‑1 (MQ=255) cacaCCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCACCGCCGAGCTGTAAt < 2:103484/149‑1 (MQ=255) acCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCAATTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCACCGCCGAGCTGTAATaca > 7:226439/1‑149 (MQ=255) tGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCAc < 6:271106/129‑1 (MQ=255) tGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGCTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCAc > 5:271106/1‑129 (MQ=255) gCGAATACCTCAAGGCCTTTTTCATCTGAAACCGGGGCAGCTCTGCGGCCACATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCACCGCCGAGCTGTAATACACCtt < 7:344038/148‑1 (MQ=255) cGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCACCGCCGAGCTGTAATACACCTTGt < 8:106748/149‑1 (MQ=255) gAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCAc < 3:324488/125‑1 (MQ=255) gAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCAc > 4:324488/1‑125 (MQ=255) ccGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCACCGCCGAGCTGTAATACACCTTGTCGAACa < 6:371673/149‑1 (MQ=255) gCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCACCGCCGAGCTGTAATACACCTTGTCGAACAgg < 5:60127/149‑1 (MQ=255) gCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCACCGCCGAGCTGTAATACACCTTGTCGAACAGGttctt < 6:327721/149‑1 (MQ=255) gCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCACCGCCGAGCTGTAATACACCTTGTCGAACAGGttctt < 8:226439/149‑1 (MQ=255) tttttCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCACCGCCGAGCTGTAATACACCTTGTCGAACAGGTTCTTCAc > 5:266729/1‑149 (MQ=255) aTCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCACCGCCGAGCTGTAATACACCTTGTCGAACAGGTTCTTCACGTTCAg > 3:273801/1‑149 (MQ=255) aTCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCACCGCCGAGCTGTAATACACCTTGTCGAACAGGTTCTTCACGTTCAg < 5:338505/149‑1 (MQ=255) gAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCACCGCCGAGCTGTAATACACCTTGTCGAACAGGttct > 2:215937/1‑135 (MQ=255) gAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCACCGCCGAGCTGTAATACACCTTGTCGAACAGGttct < 1:215937/135‑1 (MQ=255) aaaCCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTCGTTCACCGCCGAGCTGTAATACACCTTGTCGAACAGGTTCTTCACGTTCAGTTGCa < 1:294776/149‑1 (MQ=255) ccGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCatc < 3:317623/69‑1 (MQ=255) ccGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCatc > 4:317623/1‑69 (MQ=255) | GCGGCTGGGAGTAATGCCGCTGGGAGAGATTGCCTTATTGTGCGGGTTTGCCAGTGCCAGCCATTTCAGCAACCGGTTTCGCCAAGCCCTGGGGGCCACACCTGGCGAATACCGCAAGGCCTTTTTCATCTGAAACCGGGGCCGCTCTGCGGCCCCATTTGCCTAAAACTCGAAGGTGCTCGACAAACTGACCTGCCGCGCATCGCCAATCGCCACAAAGTACTGGTTCACCGCCGAGCTGTAATACACCTTGTCGAACAGGTTCTTCACGTTCAGTTGCA > NC_002947/5226506‑5226786 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |