| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,233,543 | T→C | 6.4% | V136A (GTC→GCC) | PP_4611 → | ECF family RNA polymerase sigma‑70 factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,233,543 | 0 | T | C | 6.4% | 229.6 / 4.3 | 78 | V136A (GTC→GCC) | PP_4611 | ECF family RNA polymerase sigma‑70 factor |
| Reads supporting (aligned to +/- strand): ref base T (37/36); new base C (2/3); total (39/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.38e-01 | |||||||||||
CTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCAT > NC_002947/5233397‑5233690 | cTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGGTCAAACGCGCCTTCCTGCTGGCCCAGGTc < 1:226571/149‑1 (MQ=255) cAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCt > 6:111286/1‑149 (MQ=255) aaGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTg > 2:134036/1‑149 (MQ=255) gcgcTCGCACAGGTCCCTGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GTTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTggg < 6:300386/149‑1 (MQ=255) gcgcTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTgg < 1:134036/148‑1 (MQ=255) gcgcTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGACTGGGCCACGGTT‑GGTCAAACGCGCCTACCTGCTGGCCCAGGTCGCCGGCCTg > 1:312549/1‑149 (MQ=255) cgcTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGc < 4:10057/149‑1 (MQ=255) tCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAAGAGGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGc > 1:307456/1‑148 (MQ=255) tCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGcc > 6:321754/1‑147 (MQ=255) gCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAgg > 3:240860/1‑149 (MQ=255) acacaGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGGCCagca < 4:139504/148‑4 (MQ=255) cacaGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACTGCCTGGGCCAAGGc > 1:361866/1‑149 (MQ=255) ggTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGaaa < 5:158978/149‑1 (MQ=255) gTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAg > 4:143663/1‑142 (MQ=255) gTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAg < 3:143663/142‑1 (MQ=255) ccGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAAtcgc > 5:215813/1‑149 (MQ=255) ggAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAAtcgctc < 6:298641/149‑1 (MQ=255) gAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAAtcgctcg > 4:154689/1‑149 (MQ=255) agagGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTcgcg < 5:321754/149‑1 (MQ=255) gcgcCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTgg < 6:215813/148‑1 (MQ=255) cggTGCGAGGAACAGAAGGCTATCATATTCGAGACATTGGT‑AG‑CGCTGGACCAGTTGCTGGACGGCGT‑‑TCCACCGTT‑GGTAAAACGCGCCTTCCTGCTGGCCAAGGTCTACGGCGTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCAt < 2:361866/147‑1 (MQ=255) ccGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGGCCagca < 7:197943/125‑4 (MQ=255) ccGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGGCCagca > 8:197943/1‑122 (MQ=255) gAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCt < 3:154689/149‑1 (MQ=255) aaCAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGcc < 8:350896/149‑1 (MQ=255) cAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCAc < 2:307456/149‑1 (MQ=255) cAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGGc < 5:386409/108‑1 (MQ=255) cAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGGc > 6:386409/1‑108 (MQ=255) atcatcTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAgcg > 4:71247/1‑149 (MQ=255) tcatcTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAgcgc < 3:192186/149‑1 (MQ=255) cTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTAcc > 4:94570/1‑149 (MQ=255) tCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTg > 6:116999/1‑116 (MQ=255) tCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTg < 5:116999/116‑1 (MQ=255) cGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCt < 4:73454/147‑1 (MQ=255) agaCATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGaa > 1:63084/1‑148 (MQ=255) gaCATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACgg < 5:2754/131‑1 (MQ=255) gaCATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACgg > 6:2754/1‑131 (MQ=255) ttGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGc < 5:111286/149‑1 (MQ=255) tGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAgg > 1:37651/1‑147 (MQ=255) cT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAg < 2:312549/148‑1 (MQ=255) cT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAg < 2:37651/148‑1 (MQ=255) cT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGc > 4:189851/1‑149 (MQ=255) t‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAAtcgctc < 4:292909/96‑1 (MQ=255) t‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAAtcgctc > 3:292909/1‑96 (MQ=255) aCTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGc > 8:165694/1‑74 (MQ=255) aCTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGc < 7:165694/74‑1 (MQ=255) aCTTGCTGGACGGCCT‑‑CCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTAc > 1:260057/1‑149 (MQ=255) ttGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACtt > 6:171097/1‑149 (MQ=255) ttGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACtt > 5:57247/1‑149 (MQ=255) ggACGGCCT‑‑TCCACAGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCgcgc > 2:184917/1‑149 (MQ=255) gACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCt < 5:338862/149‑1 (MQ=255) ggCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCtgt > 3:296421/1‑148 (MQ=255) ccT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGaa < 3:94570/149‑1 (MQ=255) t‑‑tCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACg > 4:108775/1‑149 (MQ=255) tCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGc > 7:86665/1‑149 (MQ=255) ccACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGcc > 6:129733/1‑149 (MQ=255) cACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCt < 1:184917/149‑1 (MQ=255) aCCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTc < 3:71247/149‑1 (MQ=255) aCCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTc < 4:240860/149‑1 (MQ=255) gTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGtt < 4:296421/149‑1 (MQ=255) gTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTc < 3:108775/148‑1 (MQ=255) gTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTc < 2:260057/148‑1 (MQ=255) gTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTc < 5:129733/148‑1 (MQ=255) aaaCGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCg > 1:351534/1‑149 (MQ=255) cgcgCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCtg < 6:57247/149‑1 (MQ=255) gcCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACACGGCCGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCtggtg > 3:246010/1‑149 (MQ=255) gcCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGTCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCtggtg < 2:63084/149‑1 (MQ=255) ctgctgGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGaa < 5:171097/149‑1 (MQ=255) gctgGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATgc > 5:41268/1‑98 (MQ=255) gctgGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATgc < 6:41268/98‑1 (MQ=255) gCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGcc > 1:95037/1‑149 (MQ=255) gCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACCGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGcc > 7:247786/1‑149 (MQ=255) ccAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGt > 4:183026/1‑149 (MQ=255) ccAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGt > 2:141789/1‑149 (MQ=255) ccAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGt < 3:189851/149‑1 (MQ=255) ccAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGt > 4:91749/1‑149 (MQ=255) ccAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGAGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGt > 5:72701/1‑149 (MQ=255) gTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCAt > 8:209476/1‑149 (MQ=255) | CTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTT‑GGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCAT > NC_002947/5233397‑5233690 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |