| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,233,549 | G→A | 6.4% | G138D (GGC→GAC) | PP_4611 → | ECF family RNA polymerase sigma‑70 factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,233,549 | 0 | G | A | 6.4% | 229.6 / 4.0 | 78 | G138D (GGC→GAC) | PP_4611 | ECF family RNA polymerase sigma‑70 factor |
| Reads supporting (aligned to +/- strand): ref base G (37/36); new base A (2/3); total (39/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.74e-01 | |||||||||||
CAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTGG > NC_002947/5233404‑5233693 | cAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCt > 6:111286/1‑149 (MQ=255) aaGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTg > 2:134036/1‑149 (MQ=255) gcgcTCGCACAGGTCCCTGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGTTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTggg < 6:300386/149‑1 (MQ=255) gcgcTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTgg < 1:134036/148‑1 (MQ=255) gcgcTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGACTGGGCCACGGTTGGTCAAACGCGCCTACCTGCTGGCCCAGGTCGCCGGCCTg > 1:312549/1‑149 (MQ=255) cgcTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGc < 4:10057/149‑1 (MQ=255) tCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAAGAGGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGc > 1:307456/1‑148 (MQ=255) tCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGcc > 6:321754/1‑147 (MQ=255) gCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAgg > 3:240860/1‑149 (MQ=255) acacaGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGGCCagca < 4:139504/148‑4 (MQ=255) cacaGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACTGCCTGGGCCAAGGc > 1:361866/1‑149 (MQ=255) ggTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGaaa < 5:158978/149‑1 (MQ=255) gTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAg > 4:143663/1‑142 (MQ=255) gTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAg < 3:143663/142‑1 (MQ=255) ccGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAAtcgc > 5:215813/1‑149 (MQ=255) ggAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAAtcgctc < 6:298641/149‑1 (MQ=255) gAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAAtcgctcg > 4:154689/1‑149 (MQ=255) agagGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTcgcg < 5:321754/149‑1 (MQ=255) gcgcCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTgg < 6:215813/148‑1 (MQ=255) cggTGCGAGGAACAGAAGGCTATCATATTCGAGACATTGGT‑AG‑CGCTGGACCAGTTGCTGGACGGCGT‑‑TCCACCGTTGGTAAAACGCGCCTTCCTGCTGGCCAAGGTCTACGGCGTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCAt < 2:361866/147‑1 (MQ=255) ccGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGGCCagca > 8:197943/1‑122 (MQ=255) ccGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGGCCagca < 7:197943/125‑4 (MQ=255) gAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCt < 3:154689/149‑1 (MQ=255) aaCAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGcc < 8:350896/149‑1 (MQ=255) cAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCAc < 2:307456/149‑1 (MQ=255) cAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGGc > 6:386409/1‑108 (MQ=255) cAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGCCGTCGACCTGGGc < 5:386409/108‑1 (MQ=255) atcatcTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAgcg > 4:71247/1‑149 (MQ=255) tcatcTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAgcgc < 3:192186/149‑1 (MQ=255) cTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTAcc > 4:94570/1‑149 (MQ=255) tCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTg < 5:116999/116‑1 (MQ=255) tCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTg > 6:116999/1‑116 (MQ=255) cGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCt < 4:73454/147‑1 (MQ=255) agaCATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGaa > 1:63084/1‑148 (MQ=255) gaCATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACgg < 5:2754/131‑1 (MQ=255) gaCATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACgg > 6:2754/1‑131 (MQ=255) ttGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGc < 5:111286/149‑1 (MQ=255) tGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAgg > 1:37651/1‑147 (MQ=255) cT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAg < 2:37651/148‑1 (MQ=255) cT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAg < 2:312549/148‑1 (MQ=255) cT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGc > 4:189851/1‑149 (MQ=255) t‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAAtcgctc < 4:292909/96‑1 (MQ=255) t‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAAtcgctc > 3:292909/1‑96 (MQ=255) aCTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGc > 8:165694/1‑74 (MQ=255) aCTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGc < 7:165694/74‑1 (MQ=255) aCTTGCTGGACGGCCT‑‑CCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTAc > 1:260057/1‑149 (MQ=255) ttGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACtt > 6:171097/1‑149 (MQ=255) ttGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACtt > 5:57247/1‑149 (MQ=255) ggACGGCCT‑‑TCCACAGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCgcgc > 2:184917/1‑149 (MQ=255) gACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCt < 5:338862/149‑1 (MQ=255) ggCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCtgt > 3:296421/1‑148 (MQ=255) ccT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGaa < 3:94570/149‑1 (MQ=255) t‑‑tCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACg > 4:108775/1‑149 (MQ=255) tCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGc > 7:86665/1‑149 (MQ=255) ccACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGcc > 6:129733/1‑149 (MQ=255) cACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCt < 1:184917/149‑1 (MQ=255) aCCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTc < 4:240860/149‑1 (MQ=255) aCCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTc < 3:71247/149‑1 (MQ=255) gTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGtt < 4:296421/149‑1 (MQ=255) gTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTc < 3:108775/148‑1 (MQ=255) gTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTc < 2:260057/148‑1 (MQ=255) gTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTc < 5:129733/148‑1 (MQ=255) aaaCGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCg > 1:351534/1‑149 (MQ=255) cgcgCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCtg < 6:57247/149‑1 (MQ=255) gcCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACACGGCCGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCtggtg > 3:246010/1‑149 (MQ=255) gcCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGTCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCtggtg < 2:63084/149‑1 (MQ=255) ctgctgGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGaa < 5:171097/149‑1 (MQ=255) gctgGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATgc > 5:41268/1‑98 (MQ=255) gctgGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATgc < 6:41268/98‑1 (MQ=255) gCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGcc > 1:95037/1‑149 (MQ=255) gCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACCGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGcc > 7:247786/1‑149 (MQ=255) ccAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGt > 2:141789/1‑149 (MQ=255) ccAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGt > 4:183026/1‑149 (MQ=255) ccAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGt < 3:189851/149‑1 (MQ=255) ccAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGt > 4:91749/1‑149 (MQ=255) ccAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGAGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGt > 5:72701/1‑149 (MQ=255) gTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCAt > 8:209476/1‑149 (MQ=255) gACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTgg < 2:95037/149‑1 (MQ=255) | CAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCT‑AG‑CGCTCGACCACTTGCTGGACGGCCT‑‑TCCACCGTTGGTCAAACGCGCCTTCCTGCTGGCCCAGGTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTGG > NC_002947/5233404‑5233693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |