| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,489,780 | A→C | 6.3% | M88L (ATG→CTG) ‡ | PP_4825 → | MarC family membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,489,780 | 0 | A | C | 6.3% | 240.2 / 6.8 | 79 | M88L (ATG→CTG) ‡ | PP_4825 | MarC family membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (34/39); new base C (3/2); total (37/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.30e-01 | |||||||||||
GCAACTGGCCTGGAAGGTCGCGTTCGCAGCCTTGGTCGCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAAC > NC_002947/5489632‑5489927 | gcaaCTGGCCTGGAAGGTCGCGTTCGCAGCCTTGGTCGCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCa < 4:312742/149‑1 (MQ=255) aaCTGGCCTGGAAGGTCGCGTTCACAGCCTTGGTCGCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATg > 2:40678/1‑149 (MQ=255) aCTGGCCTGGAAGGTCGCGTTCGCAGCCTTGGTCGCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATgg < 2:374786/149‑1 (MQ=255) gCCTGGAAGGTCGCGTTCGCAGCCTTGGTCGCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGccc < 3:147311/148‑1 (MQ=255) ccTGGAAGGTCGCGTTCGCAGCCTTGGTCGCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCTGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAg < 3:151528/149‑1 (MQ=255) cTGGAAGGTCGCGTTCGCAGCCTTGGTCGCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAgg < 8:197011/149‑1 (MQ=255) gAAGGTCGCGTTCGCAGCCTTGGTCGCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCCATGCCCAggg < 1:342576/147‑1 (MQ=255) gAAGGTCGCGTTCGCAGCCTTGGTCGCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCCATGCCCAGGGcc < 7:261483/149‑2 (MQ=255) gTTCGCAGCCTTGGTCGCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCcggcgg > 5:352963/1‑149 (MQ=255) gTTCGCAGCCTTGGTCGCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCcggcgg > 2:126241/1‑149 (MQ=255) gCAGCCTTGGTCGCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACa < 1:104816/149‑1 (MQ=255) cAGCCTTGGTCGCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAg < 7:25358/149‑1 (MQ=255) aGCCGTGGGCGCCAGCGGGTTGCGGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCTA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAgg < 4:315855/149‑1 (MQ=255) cTTGGGCGCCAGCGTGTTGTTGTACCTGTTCGGGCGGGCTATCTTCGTAATTTTCGGCAGCACCGCCTA‑TGCCTTCCGCAGCGTTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAg < 1:336305/149‑1 (MQ=255) gCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACg < 2:238863/148‑1 (MQ=255) cccAGCGTGTTGCTGTACCTGTTCGGGCGGGTGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGt > 7:164444/2‑149 (MQ=255) cAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGtt > 2:344809/1‑148 (MQ=255) cAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGtt > 3:85216/1‑148 (MQ=255) cAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTc < 5:81312/149‑1 (MQ=255) aGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGCCATCACCGCCGA‑TGCCTGCCGCATGGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGCCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTca < 3:214034/149‑1 (MQ=255) gtgtTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTcagca < 8:156409/149‑1 (MQ=255) gCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGATTGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAt > 1:284373/1‑149 (MQ=255) tACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCTA‑TGCCTTCCGAATGGGTGCTGGCAGCGGGCTTTTCATTTC‑‑‑‑GGCCCTGGGCAGGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGa < 8:309091/148‑1 (MQ=255) ccTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCa > 2:237381/1‑149 (MQ=255) cgggcgggCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTAc > 4:32101/1‑149 (MQ=255) gggcgggcGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTAcc > 6:134571/1‑149 (MQ=255) gcgggcgATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCACGGCCCAGGGCAAGCCGGCGGt < 7:115598/108‑1 (MQ=255) gcgggcgATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCAAGGCCCAGGGCAAGCCGGCGGt > 8:115598/1‑108 (MQ=255) ggcgATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGa < 6:96776/149‑1 (MQ=255) ggcgAGCTGCGTAATTTGCGGCACCCCCGCCGA‑TGCCTTCCGAAGGGGTGCGGGCCGCGTGCGGTTCATTTC‑‑‑‑GGCCCGGGGCTTGGCCCCGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGa < 2:152331/149‑1 (MQ=255) gcgATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGtt < 5:375422/120‑1 (MQ=255) gcgATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGtt > 6:375422/1‑120 (MQ=255) cgATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGAc > 4:142335/1‑148 (MQ=255) gATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCa > 6:150075/1‑149 (MQ=255) gATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCa > 5:282718/1‑149 (MQ=255) cTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTAc > 1:210133/1‑137 (MQ=255) cTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTAc < 2:210133/137‑1 (MQ=255) ttCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTcc < 5:11932/149‑1 (MQ=255) ttCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTcc > 5:137648/1‑149 (MQ=255) ggAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCt < 1:344497/149‑1 (MQ=255) ggAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCt < 6:80166/149‑1 (MQ=255) ttttCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGATCGTGACCATCGTACCGCTGACCATTCCGCTGAc < 1:237381/149‑1 (MQ=255) tttCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCg > 8:54001/1‑149 (MQ=255) cGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGtt < 1:344809/148‑1 (MQ=255) gCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGc < 2:284373/149‑1 (MQ=255) cACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCg > 2:21536/1‑149 (MQ=255) aCCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCgg < 7:54001/149‑1 (MQ=255) ccgccgA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGc > 2:115281/1‑149 (MQ=255) gccgA‑TGCCTTCCGCATCGGGGCTGGCAGCGTGCTGTTCATTTCCTTTACCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCg < 1:126241/149‑1 (MQ=255) ccTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGt > 2:182354/1‑149 (MQ=255) cTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTg < 6:352963/149‑1 (MQ=255) ttCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTcag > 5:41007/1‑87 (MQ=255) gCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGt < 6:156434/124‑1 (MQ=255) gCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGt > 5:156434/1‑124 (MQ=255) cATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCAGGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCctgc < 4:85216/149‑1 (MQ=255) tCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCctgctg < 3:32101/149‑1 (MQ=255) gTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGt > 2:70916/1‑148 (MQ=255) tGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATgg < 3:142335/149‑1 (MQ=255) gCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATgggg < 5:134571/149‑1 (MQ=255) gCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATgg < 5:150075/147‑1 (MQ=255) gTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGag < 1:70916/149‑1 (MQ=255) tGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCGCTGCTGGTGATGGGGGTGagccag > 5:253325/1‑149 (MQ=255) tGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGagccag < 6:137648/149‑1 (MQ=255) tCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCt > 6:133437/1‑82 (MQ=255) tCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCt < 5:133437/82‑1 (MQ=255) aTTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCa > 6:244372/1‑149 (MQ=255) aTTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCa > 6:249812/1‑149 (MQ=255) tttC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATgg < 8:87170/132‑1 (MQ=255) tttC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATgg > 7:87170/1‑132 (MQ=255) tttC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCAc > 3:363564/1‑149 (MQ=255) tttC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCAc > 3:66871/1‑149 (MQ=255) gcttgCCCTGGGCCATGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACt > 6:248737/5‑149 (MQ=255) ttgCCCTGGGCCATGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTgg > 3:128660/3‑149 (MQ=255) ggCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTggg < 7:207844/149‑1 (MQ=255) gCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACCTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGa > 1:266653/1‑149 (MQ=255) cccTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGAt < 8:164444/149‑1 (MQ=255) ccTGGGCCATGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGAt > 8:34845/1‑148 (MQ=255) ggCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGaaa < 4:66871/148‑1 (MQ=255) gCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGaaaa > 2:105421/1‑148 (MQ=255) cATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAAc > 1:189083/1‑149 (MQ=255) | GCAACTGGCCTGGAAGGTCGCGTTCGCAGCCTTGGTCGCCAGCGTGTTGCTGTACCTGTTCGGGCGGGCGATCTTCGGAATTTTCGGCATCACCGCCGA‑TGCCTTCCGCATCGGTGCTGGCAGCGTGCTGTTCATTTC‑‑‑‑GGCCCTGGGCATGGCCCAGGGCAAGCCGGCGGTACAGGCAGACAACGTTCAGCAGGAT‑GTGACCATCGTACCGCTGACCATTCCGCTGACCGTTGGCCCCGGCACCATCGGTGCCCTGCTGGTGATGGGGGTGAGCCAGCCGCACTGGGATGAAAAAC > NC_002947/5489632‑5489927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |