Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 459,905 | G→T | 6.8% | intergenic (‑51/+28) | pqqB ← / ← pqqA | coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 459,905 | 0 | G | T | 6.8% | 361.9 / 11.4 | 112 | intergenic (‑51/+28) | pqqB/pqqA | coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A |
Reads supporting (aligned to +/- strand): ref base G (49/55); new base T (5/3); total (54/58) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.79e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 |
Only 100 of 112 total aligned reads displayed.
GTGCCATCACGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGGTTGTTCAGCTACTACTTG > NC_002947/459763‑460051 | gTGCCATCACGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAg < 5:40712/149‑1 (MQ=255) tGCCATCACGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAgg < 3:271726/149‑1 (MQ=255) cATCACGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGt < 2:289269/149‑1 (MQ=255) cATCACGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGt < 2:284487/149‑1 (MQ=255) cATCACGGTACCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGt < 2:102330/149‑1 (MQ=255) aTCACGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGt > 8:320672/1‑148 (MQ=255) tCACGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTg > 2:115319/1‑148 (MQ=255) aCGGTAGCGCTTGCAGTAGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGaaa < 5:308432/149‑1 (MQ=255) aCGGTAGCCCTTTCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGATCCTGGATGTACATGGCCACTCTCTTTGCAGAAACC‑GGTTCGTAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCTCGGCCTGCCGGGGCGttttc < 5:268324/149‑5 (MQ=255) aCGGTAGCCCTTGCAGTTCACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGCATGTACATGGCCACTCTCTATGCAGAAACC‑GGAGCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑TAAACGCCCCGGCAGGCCGAGGCGTGaaa < 1:215295/149‑1 (MQ=255) ggTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAAcc > 7:254686/1‑149 (MQ=255) ggTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAAcc < 1:281262/149‑1 (MQ=255) gTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAAcc > 2:174826/1‑148 (MQ=255) cccTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAg > 8:102516/1‑149 (MQ=255) gCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTg < 7:102516/148‑1 (MQ=255) ttGACGCAGTTGCAGATCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTa < 5:93812/149‑1 (MQ=255) gACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAg < 8:73697/148‑1 (MQ=255) gttgcagttCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCTGAACCC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCg > 4:10138/1‑144 (MQ=255) gttgcagttCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCTGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCg < 3:10138/144‑1 (MQ=255) gttgcagttCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAg < 1:371982/149‑1 (MQ=255) cagttCCAGTGCGGGAACCCGCCACGGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGaa < 4:49750/149‑1 (MQ=255) cagttCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGaa < 4:337767/149‑1 (MQ=255) agttCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAg > 1:243099/1‑149 (MQ=255) ttCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTa > 2:229996/1‑149 (MQ=255) aCTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑g > 2:375030/1‑149 (MQ=255) aCTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑g > 1:158285/1‑149 (MQ=255) cTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑gg > 2:172941/1‑149 (MQ=255) cTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CAGGCTTAgg > 7:101719/1‑130 (MQ=255) cTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CAGGCTTAgg < 8:101719/131‑2 (MQ=255) ggAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGt > 8:265250/1‑145 (MQ=255) ggAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACt < 1:229996/149‑1 (MQ=255) gAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTGCATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAAccc < 8:290680/110‑1 (MQ=255) cccGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCg > 7:24624/1‑148 (MQ=255) ccGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCg > 4:44525/1‑147 (MQ=255) ccGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGaa < 1:115319/149‑1 (MQ=255) gCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGCCTTCGAAGc > 1:218419/1‑149 (MQ=255) gCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGc < 1:207900/149‑1 (MQ=255) cACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGcc > 5:189176/1‑148 (MQ=255) cACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGcc > 2:329459/1‑148 (MQ=255) aCCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGa > 2:43624/1‑149 (MQ=255) aCCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTATATGCAGAAACC‑GGATCTAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTCGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGa < 2:187503/149‑1 (MQ=255) cggcggcggAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACtt < 8:4994/138‑1 (MQ=255) cggcggcggAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACtt > 7:4994/1‑138 (MQ=255) gcggcggAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACg > 2:226484/1‑149 (MQ=255) cggcggAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGc < 5:369150/149‑1 (MQ=255) gcggGGCCGAGGACCTGGATGTACATGGGCACGCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAAAGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCGTTGCGGGTAGCGAAGTACAT‑GGTGACTTGGAAGCCGATTCGc > 6:369150/1‑147 (MQ=255) ggAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGt < 1:329459/149‑1 (MQ=255) aGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAACTACGCTTCCCCTTCTACAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGcc < 1:121900/149‑1 (MQ=255) aGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCa < 2:22978/149‑1 (MQ=255) gCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGt > 1:263675/1‑147 (MQ=255) gCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCa < 2:158285/148‑1 (MQ=255) gagaACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGa > 3:191650/1‑134 (MQ=255) gagaACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGa < 4:191650/134‑1 (MQ=255) gagaACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAgt > 6:3971/1‑147 (MQ=255) gagaACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCAGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAgt < 5:3971/147‑1 (MQ=255) agaACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTa > 7:301566/1‑149 (MQ=255) aCCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑Tg < 1:375030/148‑1 (MQ=255) cTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑Ct > 8:357557/1‑87 (MQ=255) cTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑Ct < 7:357557/87‑1 (MQ=255) cTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑g > 1:203006/1‑112 (MQ=255) cTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑g < 2:203006/112‑1 (MQ=255) cTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAg > 3:303493/1‑149 (MQ=255) aTGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGttt < 7:320672/149‑1 (MQ=255) cATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTc < 6:189176/148‑1 (MQ=255) aTGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGaa > 2:254805/1‑95 (MQ=255) aTGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGaa < 1:254805/95‑1 (MQ=255) tGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCCGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCca > 6:332016/1‑148 (MQ=255) ggCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGt < 4:97801/144‑1 (MQ=255) ggCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGt > 3:97801/1‑144 (MQ=255) ggCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCcaca > 1:52700/1‑149 (MQ=255) gCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCcaca < 8:301566/148‑1 (MQ=255) ccACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCCGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATg < 5:332016/149‑1 (MQ=255) ccACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATg > 7:184228/1‑149 (MQ=255) aCTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATgg > 7:23742/1‑148 (MQ=255) tctctATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTg < 1:5494/136‑1 (MQ=255) tctctATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTg > 2:5494/1‑136 (MQ=255) tctATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAAt < 8:184228/147‑1 (MQ=255) tctATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAAt < 2:243099/147‑1 (MQ=255) aTGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTc > 3:253582/1‑149 (MQ=255) tGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTcc < 2:334649/149‑1 (MQ=255) gAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTcc < 3:44525/149‑1 (MQ=255) ggATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGa < 1:172941/149‑1 (MQ=255) ggATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGa < 5:190314/149‑1 (MQ=255) aaaaa‑‑aCG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAgggttg > 7:333543/1‑149 (MQ=255) acg‑‑‑‑‑‑‑‑‑‑‑aaaacgCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGggttgggttg < 1:43624/149‑1 (MQ=255) aaaacgCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGGTTGTTc < 2:263675/149‑1 (MQ=255) acgCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGGTTGTTCAGc > 8:42851/1‑149 (MQ=255) cggcccGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGGCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGGTTGTTCAGct < 1:174826/146‑1 (MQ=255) cgCCTCGGCCTGCCGGGGCGTGAAACCCTAAGCGCTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGCCTTCGAAGCCGATACGCAGGTCAGTGTA‑‑GGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGCGGGTTGGGTGGTTCAGc > 1:51908/1‑149 (MQ=255) cgCCTCGGCCTGCCGGGGCGTGAAACCCTAAGCGCTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGTTTGTTCAGc > 1:46121/1‑149 (MQ=255) cgCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTgg > 4:366235/1‑103 (MQ=255) cgCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTgg < 3:366235/103‑1 (MQ=255) gCCTCGGCCTGCCGGGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAgggttggg > 3:347919/1‑138 (MQ=255) gCCTCGGCCTGCCGGGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAgggttggg < 4:347919/138‑1 (MQ=255) gCCTCGGCCTGCCGGGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGGTTGTTCAGcta > 2:133158/1‑149 (MQ=255) gCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGGTTGTTCAGcta > 1:271222/1‑149 (MQ=255) gCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGGTTGTTCAGCTACTACtt < 2:52700/149‑1 (MQ=255) gCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGGTTGTTCAGCTACTACtt > 1:357100/1‑149 (MQ=255) aGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACATGGGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATCAGGGTTGGGTTGTTCAGATAGTAGTTg > 1:94057/1‑149 (MQ=255) aGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTACCTGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGGTTGTTCAGCTACTACtt < 1:303363/149‑1 (MQ=255) | GTGCCATCACGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACC‑GGATCGAAAAA‑‑ACG‑‑‑‑‑‑‑‑‑‑‑AAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGC‑CTGGCTTAGCGGTTAGCGAAGTACAT‑GGTGACTTCGAAGCCGATACGCAGGTCAGTGTA‑‑TGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGGTTGTTCAGCTACTACTTG > NC_002947/459763‑460051 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |