| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,741,508 | A→T | 6.2% | intergenic (‑179/+49) | PP_5038 ← / ← PP_5039 | lipoprotein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,741,508 | 0 | A | T | 6.2% | 239.3 / 3.7 | 80 | intergenic (‑179/+49) | PP_5038/PP_5039 | lipoprotein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (43/32); new base T (2/3); total (45/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.49e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.42e-01 | |||||||||||
CCTGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCGGG > NC_002947/5741366‑5741654 | ccTGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACGGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAg > 7:195671/1‑149 (MQ=255) cTGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGc > 6:270019/1‑149 (MQ=255) cAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATgg < 5:391094/142‑1 (MQ=255) cAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCAATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATgg > 6:391094/1‑142 (MQ=255) tGACCTTCGACGTGAAAATCCCTCCCAGGTTGCCTGCCCCACCCCCTATGTGCCTACACCATTGGGCGGATGGCCACTACTGGGCGATTAATCACAAACCCTTAATCATGCGCCCAAAAAAAAAGGC‑CGCACCCAATGGGAGCgccgc > 8:203400/1‑144 (MQ=255) tGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCtt > 2:19117/1‑149 (MQ=255) aCCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGc > 3:132433/1‑149 (MQ=255) aCCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGc < 2:10817/149‑1 (MQ=255) aCCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTAAGGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATTAAAAAGGC‑CGCCCCCAATGGGAGCGGCCGTGc > 5:285653/1‑149 (MQ=255) ccTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCTCCCATTGGGGGCGGCCtttt < 8:46808/148‑3 (MQ=255) cTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGt > 7:88322/1‑149 (MQ=255) ttCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTc > 2:305626/1‑149 (MQ=255) gACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTcgc < 8:76933/148‑1 (MQ=255) aaaTCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTg < 6:184818/149‑1 (MQ=255) aaaTCCCTCCCAGGGTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTg < 2:327142/149‑1 (MQ=255) tccctcccACGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGGCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGcac < 8:195671/149‑1 (MQ=255) ccAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCAcagca > 5:159651/1‑147 (MQ=255) ccAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCAcagca < 6:159651/147‑1 (MQ=255) ccAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAgg > 1:200863/1‑149 (MQ=255) ccTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTgg < 5:270019/149‑1 (MQ=255) cTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTggg > 3:34881/1‑149 (MQ=255) cTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTggg > 5:289631/1‑149 (MQ=255) tGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGc > 2:263093/1‑149 (MQ=255) ccccTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAAc < 8:88322/149‑1 (MQ=255) ccccTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAAc > 3:377172/1‑149 (MQ=255) tCCCTACACCATTGGTCGGATGGCCACTACTGTGCTATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCgg < 8:344467/144‑1 (MQ=255) tCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCgg > 7:344467/1‑144 (MQ=255) ccTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAg > 6:338310/1‑149 (MQ=255) ccTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGCGAGCGGCCTAGCGTCGCGA‑TGCCTCCACAGCAGGCCCCTTGGGCCTCCGAGCCGGGACCCAg > 6:344000/1‑149 (MQ=255) cTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAgg > 7:173578/1‑149 (MQ=255) cATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAg < 4:132433/149‑1 (MQ=255) gTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGACCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCaaa > 6:173980/1‑148 (MQ=255) ggATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGt < 5:28892/149‑1 (MQ=255) gATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTc > 7:285340/1‑149 (MQ=255) aTGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAg > 8:113076/1‑132 (MQ=255) aTGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAg < 7:113076/132‑1 (MQ=255) aTGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTc > 6:4884/1‑148 (MQ=255) tGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCa < 1:263093/149‑1 (MQ=255) ccACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCAtct > 2:266382/1‑149 (MQ=255) cACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTgg > 4:25169/1‑107 (MQ=255) tactGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCGCGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCtt > 1:93886/1‑149 (MQ=255) tactGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTc < 7:58720/140‑1 (MQ=255) tactGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTc > 8:58720/1‑140 (MQ=255) ctGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGc > 5:199348/1‑149 (MQ=255) gATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGc > 8:224194/1‑149 (MQ=255) ttAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTc > 8:86899/1‑149 (MQ=255) ttAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTc > 1:166303/1‑149 (MQ=255) aaTCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCTGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCATCGCTGGTGCTCgg > 2:333462/1‑149 (MQ=255) aTCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCgg < 2:200863/148‑1 (MQ=255) acaAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCg < 2:224806/148‑1 (MQ=255) aaaGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTc > 1:262131/1‑149 (MQ=255) gCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAg < 7:86899/149‑1 (MQ=255) ttAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCAc < 2:262131/149‑1 (MQ=255) aaTCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCAtc > 1:8600/1‑118 (MQ=255) aaTCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCAtc < 2:8600/118‑1 (MQ=255) aTCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCAtct > 8:178400/1‑118 (MQ=255) aTCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCAtct < 7:178400/118‑1 (MQ=255) tGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCGAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtg < 5:344000/149‑1 (MQ=255) tGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtg < 5:338310/149‑1 (MQ=255) aaTAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTgg < 1:31875/116‑1 (MQ=255) aaTAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTgg > 2:31875/1‑116 (MQ=255) aaTAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggtgcg < 1:305626/149‑1 (MQ=255) tAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggtgcgg > 5:78827/1‑148 (MQ=255) aaaaaaGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCggg > 4:321888/1‑148 (MQ=255) aaaaaGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGaa < 1:266382/149‑1 (MQ=255) aaaGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGTGAAgc < 5:173980/149‑1 (MQ=255) aaGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAgcg < 7:224194/149‑1 (MQ=255) ggC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggtgc > 2:241703/1‑139 (MQ=255) ggC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggtgc < 1:241703/139‑1 (MQ=255) c‑cgctCCCATTGGGGGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggtgcg > 7:349465/1‑138 (MQ=255) c‑cgctCCCATTGGGGGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggtgcg < 8:349465/138‑1 (MQ=255) c‑cgctCCCATTGGGGGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGccc > 5:350859/1‑148 (MQ=255) cccccAATGCGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGACCATCTCTACGCTGGTGCTCGGCCGCTCAAGCACCACGTAGCGGACCGGGAAGCGCCCCAAg > 6:316472/1‑149 (MQ=255) ccccAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCa > 1:105994/1‑122 (MQ=255) ccccAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCa < 2:105994/122‑1 (MQ=255) cccAATGGGAGCGGCCTTGCGTCGCGAGTGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGc > 1:210257/1‑149 (MQ=255) cccAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCg < 6:199348/149‑1 (MQ=255) ccATTGGGGGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCgg < 6:350859/149‑1 (MQ=255) cAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCggg > 7:333089/1‑149 (MQ=255) cAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCggg < 4:34881/149‑1 (MQ=255) | CCTGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGC‑CGCCCCCAATGGGAGCGGCCTTGCGTCGCGA‑TGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCGGG > NC_002947/5741366‑5741654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |