| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,866,697 | A→C | 8.8% | intergenic (+20/+37) | PP_5140 → / ← thyA | MerR family transcriptional regulator/thymidylate synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,866,697 | 0 | A | C | 8.8% | 225.6 / 11.1 | 78 | intergenic (+20/+37) | PP_5140/thyA | MerR family transcriptional regulator/thymidylate synthase |
| Reads supporting (aligned to +/- strand): ref base A (32/39); new base C (3/4); total (35/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.42e-01 | |||||||||||
GTGGAGCTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGCCAGTTTCGGC > NC_002947/5866549‑5866844 | gtggAGCTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGa < 4:135980/149‑1 (MQ=255) gCTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCcg > 2:73640/1‑149 (MQ=255) cggcggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTTCACCCGCGaa < 7:272820/149‑1 (MQ=255) cggcggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTTCACCCGCGaa < 2:196414/149‑1 (MQ=255) cggcggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTTCACCCGCGaa < 2:37146/149‑1 (MQ=255) cggcggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGa < 4:227410/148‑1 (MQ=255) cggcggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGa < 4:211597/148‑1 (MQ=255) ggcggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAag < 3:373774/149‑1 (MQ=255) gcggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAaga < 8:39174/149‑1 (MQ=255) ggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTCCACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAagag < 1:73640/149‑1 (MQ=255) ggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAgg < 1:161868/149‑1 (MQ=255) cgcTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTc < 4:79957/149‑1 (MQ=255) cgcTGCAAAGCGCAGGGGAGTGAATTCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTc < 2:239609/149‑1 (MQ=255) gcTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAagag > 7:321452/1‑145 (MQ=255) gcTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAagag < 8:321452/145‑1 (MQ=255) gcTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCa < 2:252371/149‑1 (MQ=255) gcTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCa < 2:246971/149‑1 (MQ=255) gcTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCa < 3:20133/149‑1 (MQ=255) cTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTTCACCCGCGAagcttttgg < 2:374920/149‑8 (MQ=255) gCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGATCCCGCGAAGAGGTCAGtt > 2:310607/1‑149 (MQ=255) cAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTc > 8:72082/1‑149 (MQ=255) cAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTc > 6:305839/1‑149 (MQ=255) aaCGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTc > 7:272495/1‑148 (MQ=255) aaCGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCt < 3:9243/149‑1 (MQ=255) gcgcAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTaa > 3:246274/1‑148 (MQ=255) gcAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACaa < 5:26412/149‑1 (MQ=255) gcAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACaa > 3:121531/1‑149 (MQ=255) aGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATa < 5:184015/149‑1 (MQ=255) gggAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATTTGGGGCGGAGT‑CACGGGCATTGAGGCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATaga < 7:50874/149‑1 (MQ=255) gggAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATaga < 1:209815/149‑1 (MQ=255) gAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATa > 8:155129/1‑145 (MQ=255) aaTGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGtt > 2:295151/1‑131 (MQ=255) aaTGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGtt < 1:295151/131‑1 (MQ=255) aaTGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGAtata > 5:276476/1‑148 (MQ=255) gcgATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGAc > 4:82265/1‑149 (MQ=255) gcgATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGAc > 4:77153/1‑149 (MQ=255) gcagcaACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCa < 5:10556/146‑1 (MQ=255) aaCTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCt < 6:293660/149‑1 (MQ=255) aaCTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCt < 1:161632/149‑1 (MQ=255) aCTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTg < 4:121531/149‑1 (MQ=255) tGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGt > 5:236426/1‑148 (MQ=255) gaCAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCg < 7:263962/149‑1 (MQ=255) cAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCgg < 8:272495/148‑1 (MQ=255) aaaCGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACAGCCATCGGCGCTGTCATCGgcg > 8:327670/1‑149 (MQ=255) ggTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTTATCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCt < 1:310607/149‑1 (MQ=255) tCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATa < 4:246274/149‑1 (MQ=255) tCGGGACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCAAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATa < 6:236426/149‑1 (MQ=255) cGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAg > 7:155830/1‑149 (MQ=255) ccGGAAACCGAACATTCCCATGTGGGTCGCAGT‑CACGGGCATTGAGCCAAAAGCTAGACCCGGTGAAACCGCGAACAGGTCAGTTCTAACAAAACAGATCTATCAGACCGCAATCGGCGCTGTCATAGGCGCATGGTGCTCATAGACtt > 1:104493/1‑149 (MQ=255) ggATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTcca < 7:155129/149‑1 (MQ=255) gATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTccag < 7:72082/149‑1 (MQ=255) gAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGa > 1:247053/1‑148 (MQ=255) aTTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCa > 4:43533/1‑149 (MQ=255) aTTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCa > 7:141613/1‑149 (MQ=255) aTTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCa < 6:276476/149‑1 (MQ=255) cgcATGTGGGGCGGAGT‑CACGGGCATTGTGCCAATAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTcc < 6:324403/132‑1 (MQ=255) cccATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGCACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTcc > 5:324403/1‑134 (MQ=255) gtgGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGGGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCt > 5:330701/1‑148 (MQ=255) gggCGGAGT‑GACGGGCATTGAGCCATATGCT‑TGGCGTGTGATGCCGCGAAGAGGTGAGTTCTAAGAATAGAGTTGTATCAGACCGCCATCGGCGCTGTCATCTGCTGATGGTGCTCATAGCCTTCGAGCCAGAAATCACTCGGCTCAAt < 2:104493/149‑1 (MQ=255) gggCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCaa < 7:327670/148‑1 (MQ=255) gAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTccagc > 5:230025/1‑124 (MQ=255) gAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTccagc < 6:230025/124‑1 (MQ=255) t‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCa < 4:120369/149‑1 (MQ=255) aCGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGc > 5:135272/1‑149 (MQ=255) cGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGc > 5:231785/1‑148 (MQ=255) aTTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAAtc < 3:212787/134‑1 (MQ=255) aTTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAAtc > 4:212787/1‑134 (MQ=255) aTTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTcc > 7:182618/1‑149 (MQ=255) aGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTT‑CAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTc > 5:125371/1‑149 (MQ=255) gCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCt > 3:22567/1‑148 (MQ=255) ccAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCa > 5:218227/1‑149 (MQ=255) cAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCa > 3:306319/1‑148 (MQ=255) cAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCAt < 5:305839/149‑1 (MQ=255) aaaaGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCAt > 2:164251/1‑148 (MQ=255) cctcT‑TCGCGGGTTCACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACt > 5:82502/4‑149 (MQ=255) t‑tCGCGGGTTCACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGc > 3:319090/1‑148 (MQ=255) gTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCa < 3:121212/51‑1 (MQ=255) gTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCa > 4:121212/1‑51 (MQ=255) gTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTT‑CAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGCCAGTTTCgg < 6:125371/149‑1 (MQ=255) aaCCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCAAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGCCAGTTTCGGc > 4:235007/1‑148 (MQ=255) | GTGGAGCTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGT‑CACGGGCATTGAGCCAAAAGCT‑TCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATCTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGCCAGTTTCGGC > NC_002947/5866549‑5866844 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |