| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,021,700 | T→G | 8.1% | intergenic (‑51/‑93) | PP_5272 ← / → PP_5273 | hypothetical protein/oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,021,700 | 0 | T | G | 8.1% | 182.2 / 4.8 | 59 | intergenic (‑51/‑93) | PP_5272/PP_5273 | hypothetical protein/oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base T (28/26); new base G (2/3); total (30/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACCGGGCCGCAGCAGTCGTGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCACGCCGCCTCCTATTACGCCGCCAGCAGCGCG > NC_002947/6021558‑6021843 | aCCGGGCCGCAGCAGTCGTGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCcg > 7:56606/1‑149 (MQ=255) ccGGGCCGCAGCAGTCGTGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCcgc < 6:222194/149‑1 (MQ=255) ccGGGCCGCAGCAGTCGTGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTGAACCcgc > 3:361448/1‑149 (MQ=255) cGGGCCGCAGCAGTCGTGGCAGCAGGGCTCGCACTAGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATAGATGCTGACAAAGTGATTGTATTATAGGCTTATTCGCGGGTTCAGCctcg < 6:99301/149‑1 (MQ=255) ccGCAGCAGTCGTGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCcgcg > 8:72377/1‑145 (MQ=255) ccGCAGCAGTCGTGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCcgcg < 7:72377/145‑1 (MQ=255) cGCAGCAGTCGTGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTGAACCCGCGaataa < 2:64549/149‑4 (MQ=255) cGCAGCAGTCGTGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGAGTGAACCCGCGaataa < 6:4480/149‑4 (MQ=255) gcagcaGTCGTGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAg < 6:104401/149‑1 (MQ=255) gcagcaGTCGTGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTGAACCCGCGaataag < 4:361448/149‑5 (MQ=255) agcagGCGTGGCAGCCGGGCTCGCAGTCGAAAGATGGGATGAGTTCGCGCAGGAAGTTTATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTa < 8:26306/149‑1 (MQ=255) tCGTGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAg > 5:286743/1‑149 (MQ=255) gTGGCAGCCGGTCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGcc < 7:182724/149‑1 (MQ=255) aaGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGc > 3:10851/1‑131 (MQ=255) aaGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGc < 4:10851/131‑1 (MQ=255) agagGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAAGCCCTCGCTGGTTGCCCGGCCGCGAt < 1:23377/149‑1 (MQ=255) agagGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATg < 4:165667/149‑1 (MQ=255) aTGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGc < 1:36442/149‑1 (MQ=255) ttCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGcaca < 8:362657/142‑1 (MQ=255) ttCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGcaca > 7:362657/1‑142 (MQ=255) ttCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATc > 3:84104/1‑149 (MQ=255) gcgcAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTc > 1:201248/1‑149 (MQ=255) gcgcAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTc > 8:110900/1‑149 (MQ=255) cgcAGGAAGTGGATCTTGTGGCGGATTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTc > 7:237700/1‑149 (MQ=255) cAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTc > 2:278650/1‑149 (MQ=255) aGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGCTACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTcc < 6:286743/149‑1 (MQ=255) ggAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGGCAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTccc < 6:189498/149‑1 (MQ=255) gAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCg > 1:79748/1‑119 (MQ=255) gAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCg < 2:79748/119‑1 (MQ=255) gAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTcccc > 7:355340/1‑149 (MQ=255) cTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCACCCTCCAttt > 7:250190/1‑149 (MQ=255) ttGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCAtttt > 7:22209/1‑149 (MQ=255) tgGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTc < 5:144482/148‑1 (MQ=255) gg‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGgc < 4:84104/149‑1 (MQ=255) ttGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAAc > 4:333825/1‑73 (MQ=255) ttGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAAc < 3:333825/73‑1 (MQ=255) ttGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGcac > 6:224122/1‑113 (MQ=255) ttGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGgccg < 8:22209/149‑1 (MQ=255) aGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGccc > 7:194428/1‑148 (MQ=255) gACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCaa < 8:355340/149‑1 (MQ=255) tGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGAt < 8:237700/149‑1 (MQ=255) cGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCca > 6:260987/1‑149 (MQ=255) gACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCAc > 6:15648/1‑149 (MQ=255) aaaGTGATTGGATTATAGGCTTATTCGCGGGTTAACCCGCGAACGAGTATG‑AAGCCCTCCCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCAATTTTCAGGGCCGCCCCAATGATCCAAACACCGCAGCAcccc > 7:58209/1‑149 (MQ=255) aaaGTGATTGGATTATACGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCAcgcc < 8:56606/149‑1 (MQ=255) aaGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCAGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCAcgccg > 1:292942/1‑149 (MQ=255) aGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCAc < 3:233581/144‑1 (MQ=255) aGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCAc > 4:233581/1‑144 (MQ=255) tGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCACGCCGcct < 2:201248/149‑1 (MQ=255) gATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCACGCCGcctc > 4:31387/1‑149 (MQ=255) ggATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCACGCCGCCTCCTAt > 8:220283/1‑149 (MQ=255) gATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCACGCCGCCTCCTAt < 7:220283/148‑1 (MQ=255) aGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATcc < 2:349528/77‑1 (MQ=255) aGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATcc > 1:349528/1‑77 (MQ=255) cTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCACGCCGCCTCCTATTACGCCGCca > 6:45141/1‑149 (MQ=255) tcgttCGCGGGTGAACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCACGCCGCCTCCTATTACGCCGCcag > 8:115634/4‑149 (MQ=255) tCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCa < 3:111431/90‑1 (MQ=255) tCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCa > 4:111431/1‑90 (MQ=255) cgGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCACGCCGCCTCCTATTACGCCGCCAGCAgcgcg > 7:218947/1‑149 (MQ=255) | ACCGGGCCGCAGCAGTCGTGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGG‑TTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATG‑AAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCACGCCGCCTCCTATTACGCCGCCAGCAGCGCG > NC_002947/6021558‑6021843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |