| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 499,203 | A→G | 100% | intergenic (+47/‑249) | uhpA → / → PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 499,203 | 0 | A | G | 100.0% | 164.3 / NA | 48 | intergenic (+47/‑249) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (21/27); total (21/27) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCAGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTA > NC_002947/499078‑499340 | ggCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGGAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGggcctgg > 6:387070/1‑149 (MQ=255) gCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCctgc < 5:124720/149‑1 (MQ=255) tGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGgcctggcctg > 6:121432/1‑145 (MQ=255) tGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGgcctggcctg < 5:121432/145‑1 (MQ=255) gATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTTGCCTGCTGAt > 8:206109/1‑149 (MQ=255) gATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGa > 6:382441/1‑148 (MQ=255) gATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGa < 5:382441/148‑1 (MQ=255) aTGCAGAAGTTTAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGAt < 5:227709/148‑1 (MQ=255) tGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGAtct < 1:309496/149‑1 (MQ=255) cAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGACGCCTATGTGGGAGCGGGCATGCCCGCGC‑ACGGGCCTGGGcggctgggggcg > 4:254631/1‑143 (MQ=255) gAAGTTGAAAGTGCACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTAt < 2:280544/149‑1 (MQ=255) aGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATgg < 5:243729/149‑1 (MQ=255) aaCTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGcc > 2:19457/1‑149 (MQ=255) gcgcAGCTGGGTAATTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg < 2:191781/149‑1 (MQ=255) aGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCAt < 3:254631/149‑1 (MQ=255) cTGGTGGAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGc < 5:387070/149‑1 (MQ=255) cTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGc < 5:149596/149‑1 (MQ=255) tGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATATCAATGGCTGAGCCGGCCTCTTCGCGGGCATGcc > 5:364916/1‑149 (MQ=255) gTGAAGTACGCCATGGAGCACAAGCTGATCTAATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑AAGGGCCTGGCCTGCTGATCTCTATGGCTGAGGCGGCCTCTTAGCGGGCATGGCCg < 1:33778‑M2/149‑2 (MQ=255) gTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGggc > 7:362613/1‑94 (MQ=255) gTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGggc < 8:362613/94‑1 (MQ=255) cATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATTCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGGCTCTTCGCGGGCATGCCCGCTACCCCAGGt > 6:177363/1‑149 (MQ=255) cATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg > 4:124709/1‑129 (MQ=255) cATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg < 3:124709/129‑1 (MQ=255) cATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCAGGCCTGCTGATCTCTATGGCTGAGACGGCCTCTTCGCGGGCATGGCCGCTCCCACAggg > 6:171861/1‑148 (MQ=255) tGGAGCACAAGCTGATCTGATTGCGACATACGGGGCCCCGAAACTTGCCGAACCCTATGTGGCAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCGGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGttt < 2:244404/149‑1 (MQ=39) ggAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCCTGCCCCCGA‑ACGGGCCGGGGCGGGGGGTCTCGATGGGGGAGCCCGCCGATTAGCGGGCATGCCCGCGGCCCCAGGgttg > 4:264152/1‑148 (MQ=255) cacaAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCTTAGCCGGCCTCTTCGCGGGCATGCCCCCTCCCACAGGTTTCGTgg > 7:345179/1‑149 (MQ=255) atctgatTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATTCCCGCGA‑ACGGGCCTGGCCGGGTGATATATATTGGTGAGCCGGGCTCTTAGCGGGCATGCCCGCGCCCACAGGTTTAGTGGGTTGCTCg > 2:123806/1‑148 (MQ=255) atctgatTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCAAGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCGGCGCCGGCCTCTTAGCGGGCCTGGCCGCTCCCACAGGTTTCGTGGCTGGGTCg > 5:85873/1‑148 (MQ=255) tatTGAGACATCCGGGTGCCGTAAACTTGCCTATTCTTTTGTGGGAGGGGGCATGCCCGCTA‑AGGGGCCTGTCGTGCTGATCTCTATGGCTTAGCCGGCCTCTTCGCGGTCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAg < 8:345179/147‑1 (MQ=255) gACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg < 7:164197/103‑1 (MQ=255) gACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg > 8:164197/1‑103 (MQ=255) ggTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATTCCCGCGAGACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATccc > 1:279496/1‑149 (MQ=255) ccGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGC‑ACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCACTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTACAATCCCGCCCTc > 5:180733/1‑149 (MQ=39) cGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATcc > 5:181525/1‑149 (MQ=255) cGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATcc < 1:19457/149‑1 (MQ=255) gAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTTGCGTGCTTATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATTCCCGGTCCCCCAGGTTTGGTGGTTGGGTAGCAAGGGCATTACCATCCCGCCATGCt > 2:41538/1‑149 (MQ=255) aCTTGCCTAAGCCTCTGTGGGTGCGGGCAGGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTGTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGt < 6:180733/149‑1 (MQ=38) cTTCCCGAACCCTATGTGGGAGCGGGAATGCCCGCGA‑ACGGGCCGGGCCTGCTGATCTCTATGGCTGAGCCGTCGTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTa < 8:81873/149‑1 (MQ=38) ccGAAGCCTATGTGGGAGCGGGCTTGCCCGCGA‑ACGGGCCTGGCCTGGTGTTCTCTTTGGCTGCGCCGGCCTCTTCGGGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAggg < 3:283020/148‑1 (MQ=255) cGAAGCCTATGTGGGAGCGGGCAAGCCCGCGA‑ACCGGCCAGGGCGGCTGATGTATATGGCGGAGCCGCCCTCTTCGCGGGCAAGCCCCCTCCCACAGGTTTCGGTGTTGGCTCGCAAAGGCAATACAATACCGCCATACATGTAggg > 4:283020/1‑147 (MQ=255) cgCCTATGTGGGAGGGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTCATCTCTATGGCTGACCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCACTCCCGCCATCCTTGTAGGGCGATc < 7:206109/148‑1 (MQ=39) aGCCTATGGGGCAGCGGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCTCAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATc < 5:75906/149‑1 (MQ=255) ccTATGGGGGCCCGGGCAGGCCCGCGA‑ACGGGCCTGGCCGGCTGAGCTCTATGGCTGCGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATccc < 3:264152/149‑1 (MQ=38) catttgtgGGAGCGGGCATGCCCGCTA‑ACGGGCCTGGCCTGCTTATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATccc < 6:364916/145‑1 (MQ=255) aaTGTGGGAGCGGGCATGCCCGCGA‑ACGGGCCTCGCCTGCTTATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTa < 5:177363/148‑1 (MQ=255) ggggggAGCGGGCATTCCCGCGA‑CCGGGCCTGGCCTGCTCATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTa < 5:171861/144‑1 (MQ=39) | GGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCAGGCATGCCCGCGA‑ACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTA > NC_002947/499078‑499340 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |