| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,052,874 | A→C | 6.6% | L198R (CTG→CGG) ‡ | PP_5305 ← | epimerase/dehydratase‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,052,874 | 0 | A | C | 6.6% | 283.6 / 7.4 | 90 | L198R (CTG→CGG) ‡ | PP_5305 | epimerase/dehydratase‑like protein |
| Reads supporting (aligned to +/- strand): ref base A (43/41); new base C (3/3); total (46/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 | |||||||||||
GCTGCTCATCGGACCATTCGGTAACCCCCATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAGGCGGACCACGCTCGCCGGGATGC > NC_002947/6052728‑6053018 | gctgctCATCGGACCATTCGGTAACCCCCATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑gg > 6:363267/1‑149 (MQ=255)gctgctCATCGGACCATTCGGTAACCCCCATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑gg > 1:212058/1‑149 (MQ=255) aTCGGACCATTCGGTAACCCCCATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCC‑TGCTggcgt > 5:95375/1‑148 (MQ=255) aTCGGACCATTCGGTAACCCCCATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCC‑TGCTggcgt < 6:95375/149‑2 (MQ=255) aTCGGACCATTCGGTAACCCCCATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCC‑TGCTggcgt < 1:295290/149‑2 (MQ=255) aTCGGACCATTCGGTAACCCCCATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTggcg < 4:344678/148‑1 (MQ=255) aTCGGACCATTCGGTAACCCCCATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTggcg < 2:212058/148‑1 (MQ=255) tCGGACCATTCGGTAACCCCCATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCC‑TGCTggcgtt > 5:246398/1‑147 (MQ=255) ggACCATTCGGTAACCCCCATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCC‑TGCTggcgtttc < 6:246398/149‑5 (MQ=255) ggACCATTCGGTAACCCCCATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCAt < 5:24962/149‑1 (MQ=255) cATTCGGTAACCCCCATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTc > 5:5289/1‑149 (MQ=255) aTTCGGTAACCCCCATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCAAGCA‑GGCTGGAGGCATCTTCg > 7:146926/1‑149 (MQ=255) ttCGGTAACCCCCATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCgg > 8:220421/1‑149 (MQ=255) cccccATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATg < 7:220421/149‑1 (MQ=255) ccccATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGc > 3:176852/1‑149 (MQ=255) ccccATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGc > 7:107630/1‑149 (MQ=255) ccccATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGc > 8:222794/1‑149 (MQ=255) ccccATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGc > 2:293755/1‑149 (MQ=255) ccATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCCGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCgg > 6:276/1‑149 (MQ=255) gCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAgcggc < 5:363267/149‑1 (MQ=255) gCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAgcggc < 6:5289/149‑1 (MQ=255) gCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGACATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAgcggc < 1:336895/149‑1 (MQ=255) cAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGcggcg‑‑g < 7:222794/149‑1 (MQ=255) aGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCggcg‑‑gc > 1:66882/1‑149 (MQ=255) ccaccaCATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑Gctcc > 3:151759/1‑149 (MQ=255) accacATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑Gctcctc < 4:176852/149‑1 (MQ=255) aacaTCGCCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGAAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCTTACAGCGGCG‑‑GCTCCTCgg > 5:359759/2‑149 (MQ=255) gCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAAcgcg < 5:316769/149‑1 (MQ=255) gcCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGTCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTg < 4:6896/149‑1 (MQ=255) gtcATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCt < 5:323021/149‑1 (MQ=255) gtcATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCt < 2:66882/149‑1 (MQ=255) gtcATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCt < 1:293755/149‑1 (MQ=255) catcaACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTgg > 3:147809/1‑149 (MQ=255) catcaACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTgg > 3:372613/1‑149 (MQ=255) atcaACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGc > 4:148881/1‑149 (MQ=255) tcaACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑ACTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCt < 1:228491/149‑1 (MQ=255) aCGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAAAGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAg > 1:50004/1‑149 (MQ=255) caattgaGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTTCAGCAGAAACGCAAGCA‑TGCTGGCGTCATCTTCGGCAGGAAGGCTTTTTCCATACAGCGGCG‑‑GCTACTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAAc < 1:193735/143‑1 (MQ=255) cAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑Gctcctc < 2:63652/112‑1 (MQ=255) cAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑Gctcctc > 1:63652/1‑112 (MQ=255) cAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAAc > 4:126132/1‑149 (MQ=255) cAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAAc > 3:235902/1‑149 (MQ=255) aTGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCa > 5:51025/1‑149 (MQ=255) aGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTcg > 6:165628/1‑149 (MQ=255) aGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTc < 2:79926/148‑1 (MQ=255) gCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCAc > 1:143415/1‑145 (MQ=255) gCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCAc < 2:143415/145‑1 (MQ=255) gCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTcgc < 8:107630/149‑1 (MQ=255) aGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCgcgc > 3:68342/1‑149 (MQ=255) gtcgtcCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCAGGGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCgcgc > 1:284811/1‑149 (MQ=255) gtcCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTg < 3:148881/149‑1 (MQ=255) tcCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTgg > 5:280750/1‑149 (MQ=255) ccAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTggg > 3:250780/1‑149 (MQ=255) ccAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTggg > 7:227049/1‑149 (MQ=255) ccAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTACCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTggg > 2:121853/1‑149 (MQ=255) cAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAATGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGc < 2:50004/149‑1 (MQ=255) cAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGc > 5:179234/1‑149 (MQ=255) cAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGc < 4:250780/149‑1 (MQ=255) gagCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCa < 3:126132/149‑1 (MQ=255) agCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCa > 6:51269/1‑148 (MQ=255) gCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATa < 2:317221/149‑1 (MQ=255) gCCTTGCCATCAGCATCGGACTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATa < 8:146926/149‑1 (MQ=255) ccTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCa > 7:288296/1‑146 (MQ=255) cTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGa < 6:359759/149‑1 (MQ=255) tGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGc < 6:50813/141‑1 (MQ=255) tGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGc > 5:50813/1‑141 (MQ=255) gCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGAt < 6:280750/147‑1 (MQ=255) cATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCg > 1:110298/1‑149 (MQ=255) aTCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAAc < 7:363439/121‑1 (MQ=255) aTCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAAc > 8:363439/1‑121 (MQ=255) aTCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCgg > 5:186069/1‑149 (MQ=255) aTCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCgg > 5:17747/1‑149 (MQ=255) aGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTc < 6:179234/148‑1 (MQ=255) cATCGGTCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAgg > 7:356523/1‑149 (MQ=255) cATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAgg < 8:288296/149‑1 (MQ=255) aTCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAAcgc > 5:294888/1‑86 (MQ=255) aTCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAAcgc < 6:294888/86‑1 (MQ=255) tCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAGGCg < 6:51025/149‑1 (MQ=255) ggCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAGGCGGa < 6:186069/149‑1 (MQ=255) ggCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAGGCGGa > 3:319883/1‑149 (MQ=255) ccTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAGGCGGAcc < 6:17747/149‑1 (MQ=255) cagAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAGGCGGACCACGc > 2:192852/1‑146 (MQ=255) cagAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAGGCGGACCACGc < 1:192852/146‑1 (MQ=255) cagAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAGGCGGACCACGCTCg > 1:144574/1‑149 (MQ=255) ccGCCAGCC‑TGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAGGCGGACCACGCTCGCCgg > 7:334297/2‑148 (MQ=255) cGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAGGCGGACCACGCTCGCCGGGa < 2:110298/149‑1 (MQ=255) gCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAGGCGGACCACGCTCGCCGGGAt < 5:276/149‑1 (MQ=255) ccAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAGGCGGACCACGCTCGCCGGGATg > 3:311827/1‑149 (MQ=255) ccAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAGGCGGACCACCCTCGCCGGGATg < 4:147809/149‑1 (MQ=255) ccAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTACCATACAGCGGCGCTGCACCTCGGCTCTGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAGGCGGACCACGCTCGCCGGGa < 1:121853/149‑1 (MQ=255) cagca‑gGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAGGCGGACCACGCTCGCCGGGATGc > 6:153153/1‑149 (MQ=255) | GCTGCTCATCGGACCATTCGGTAACCCCCATGTAGGCCCGCAGCCAGGCCACCACATCGGCCAGCGGCGCCGGGTCGTCATCAACGCCAATGTAGCAGTCGTCCAGAGCCTTGCCATCAGCATCGGCCTGCAGCAGAAACGCCAGCA‑GGCTGGCGGCATCTTCGGCATGAATGCGGTTGCCATACAGCGGCG‑‑GCTCCTCGGCAACGCGGTAACCCTGACGCACCTGGCTCAGCAACCACTCGCGCCCTGGGCCATAGATACCGGTCAGGCGGACCACGCTCGCCGGGATGC > NC_002947/6052728‑6053018 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |