| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,111,188 | G→C | 6.4% | P108A (CCA→GCA) | PP_5361 ← | protein P47K |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,111,188 | 0 | G | C | 6.4% | 247.0 / 5.8 | 78 | P108A (CCA→GCA) | PP_5361 | protein P47K |
| Reads supporting (aligned to +/- strand): ref base G (36/36); new base C (3/2); total (39/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.17e-01 | |||||||||||
GTTTCGCCCCGGCTGGCCAGGCTGTCTGCTGCCTGATAGTCGCGCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATGCAGCCGTTGCTCATCTCGACCAGTTTCTCTTCAGCGCGG > NC_002947/6111040‑6111336 | gTTTCGCCCCGGCTGGCCAGGCTGTCTGCTGCCTGATAGTCGCGCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTgg > 8:77271/1‑149 (MQ=255) gCCCCGGCTGGCCAGGCTGTCTGCTGCCTGATAGTCGCGCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTg > 2:49629/1‑149 (MQ=255) cccGGCTGGCCAGGCTGTCTGCTGCCTGATAGTCGCGCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGc > 8:245883/1‑149 (MQ=255) cGGCTGGCCAGGCTGTCTGCTGCCTGATAGTCGCGCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGCCAGTGGCtg < 2:359299/149‑2 (MQ=255) gCTGGCCAGGCTGTCTGCTGCCTGATAGTCGCGCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCag < 4:264469/149‑1 (MQ=255) cTGGCCAGGCTGTCTGCTGCCTGATAGTCGCGCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCaga < 3:208827/149‑1 (MQ=255) cTGTCTGCTGCCTGATAGTCGCGCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGt < 6:78939/149‑1 (MQ=255) tCTGCTGCCTGATAGTCGCGCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTg < 3:267006/147‑1 (MQ=255) ctgcCTGATAGTCGCGCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTc > 2:369412/1‑148 (MQ=255) tgcCTGATAGTCGCGCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGa < 3:6978/149‑1 (MQ=255) ccTGATAGTCGCGCAGGAAGTTCAAGCCTTCGAGCACGGTGA‑CCATGGTGTCCAGTCGCTCCATATCGGAGAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCGCATCCACTGGCAGTGGCTc < 2:334372/127‑1 (MQ=38) ccTGATAGTCGCGCAGGAAGTTCAAGCCATCGACCACGGTGAGCCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGa > 1:72726/1‑148 (MQ=255) ccTGATAGTCGCGCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGAt < 2:72726/148‑1 (MQ=255) ccTGATAGTCGCGCAGGAAGTTCAAGCCATCGACCACGCTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGACGCGGAAAGTGAAGGTCTCAGCCACAGGCACTGGCTc > 1:334372/1‑127 (MQ=255) aTAGTCGCGCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGc < 7:46764/148‑1 (MQ=255) gTCGCGCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCTCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCaaa < 7:245883/148‑1 (MQ=255) gTCGCCCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCATTCTCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAaat < 6:226045/149‑1 (MQ=255) tCGCGCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAg > 1:87295/1‑143 (MQ=255) tCGCGCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAg < 2:87295/143‑1 (MQ=255) gagcAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGAGGCTCAGAGATACCGGTGGACTCGATCAGCAaataat > 8:199289/3‑149 (MQ=255) cgcAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATc < 1:49629/149‑1 (MQ=255) cgcAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATc < 4:99689/149‑1 (MQ=255) gcAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATc > 8:118744/1‑148 (MQ=255) cAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGa < 6:303406/149‑1 (MQ=255) gAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAAc > 8:102297/1‑149 (MQ=255) aGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCctct > 4:346162/1‑149 (MQ=255) aGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGCCAGTGGCtga < 2:102985/104‑3 (MQ=255) aGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGCCAGTGGCtga > 1:102985/1‑102 (MQ=255) cATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCg > 4:233539/1‑149 (MQ=255) aTCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAaataat > 8:81142/1‑131 (MQ=255) aTCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAaataat < 7:81142/131‑1 (MQ=255) aTCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCgg < 1:369412/149‑1 (MQ=255) gACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCgg > 5:93164/1‑107 (MQ=255) gACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCgg < 6:93164/107‑1 (MQ=255) aCCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGa < 2:274510/115‑1 (MQ=255) aCCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGa > 1:274510/1‑115 (MQ=255) aCCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAg > 2:31364/1‑149 (MQ=255) cGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTcgc < 7:50558/149‑1 (MQ=255) ggTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTcgcg < 7:102297/149‑1 (MQ=255) gTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCgcgc < 1:8704/149‑1 (MQ=255) a‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAAc > 3:8014/1‑149 (MQ=255) cATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAAcct > 7:96778/1‑149 (MQ=255) cATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAAcct > 6:246240/1‑149 (MQ=255) cATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAAcct > 5:254931/1‑149 (MQ=255) cATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAAcct > 5:369449/1‑149 (MQ=255) aGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAg < 5:246240/149‑1 (MQ=255) gcgcCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCt > 2:168292/1‑149 (MQ=255) gcgcCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCt > 2:378279/1‑149 (MQ=255) ccATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTcg > 1:371385/1‑149 (MQ=255) cATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTcgc < 6:254931/149‑1 (MQ=255) gACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAGCCTCCTCGAGCAGGTCTTCGCGCACCGt > 2:284628/1‑149 (MQ=255) gACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACATCCTCGAGCAGGTCTTCGCGCAACGt > 1:347522/1‑149 (MQ=255) gACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTgcag < 7:77271/149‑1 (MQ=255) cGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCaa < 4:8014/147‑1 (MQ=255) aCCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATg > 1:64853/1‑148 (MQ=255) cTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGaaa > 6:350851/1‑82 (MQ=255) cTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATGCAGc < 1:378279/149‑1 (MQ=255) cTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATGCAGcc < 3:377349/147‑1 (MQ=255) cTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATGCAGCCg < 7:199289/148‑1 (MQ=255) gtcgCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATGCa < 6:144005/141‑1 (MQ=255) gtcgCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATGCa > 5:144005/1‑141 (MQ=255) gtcgCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATGCAGCCGTTg < 1:168292/148‑1 (MQ=255) ggAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATGCAGCCGTTGCTCAtc < 2:64853/149‑1 (MQ=255) gAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATGCAGCCGTTGCTCAtct < 3:346162/149‑1 (MQ=255) gAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATGCAGCCGTTGCTCAtct < 5:345401/149‑1 (MQ=255) tGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGT‑‑‑GCAAATGCAGCCGTTGCTCATCTCGACCAGt > 3:192405/1‑149 (MQ=255) gtatctctgAGCCACTGCCAGTGGCTGAGAGATACCGCTGGACTCGATCAGCAAAAAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGATCAGATCTTCGCGCAACGTGCAGCAAATGAATCCGTTGCTAATCTCGAc > 6:147058/6‑147 (MQ=255) aaGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATGCAGCCGTTGCTCATCTCGACCAg > 4:103929/1‑149 (MQ=255) aaGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCATCGCGCAACGTGCACCAAATCCAGCCGTTGCTCATCTCCACCAg > 6:49835/1‑149 (MQ=255) tctgAGCCACTGCCAGTGGCTGAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATGCAGCCGTTGCTCATCTCGACCAGTTtc > 2:2576/1‑149 (MQ=255) tctcAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAAcctc > 1:362060/1‑88 (MQ=255) tctcAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAAcctc < 2:362060/88‑1 (MQ=255) tcAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATGCAGCCGTTGCTCATCTCGACCAGTTtctc > 4:169058/1‑149 (MQ=255) tcAGCCACTGGCAGTGGCTCAGAGATACCGGTAGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATGCAGCCGTTGCTCATCTCGACCAGTTtctc > 1:237477/1‑149 (MQ=255) aGCCACTGTCAGTGGCTCAGAGATACGGGTGGACTCGATCAGCAAATTATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGGAGCAAATGCAGCCGTTGCTCATCTCGACCAGTTtct < 5:49835/146‑1 (MQ=255) aGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATGGAGCCGTTGCTCATCTCGACCAGTTTCTCtt < 1:31364/149‑1 (MQ=255) ccACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCgg < 2:173338/66‑1 (MQ=255) ccACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCgg > 1:173338/1‑66 (MQ=255) aCTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATGCAGCCGTTGCTCATCTCGACCAGTTTCTCTTCAgc > 6:236105/1‑149 (MQ=255) gCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCTCGCAACGTGCAGCAAATGCAGCCGTTGCTCATCTCGACCAGTTTCTCTTCAGCGCgg > 3:138383/1‑149 (MQ=255) | GTTTCGCCCCGGCTGGCCAGGCTGTCTGCTGCCTGATAGTCGCGCAGGAAGTTCAAGCCATCGACCACGGTGA‑CCATGGTGTCCAGTCGCGCCATATCGGACAGACTGCGACCCTGCTCGTCGCGGAAAGTGAAGGTCTCAGCCACTGGCAGTGGCTCAGAGATACCGGTGGACTCGATCAGCAAATAATCGAAACGCCCCTCTTCGGCCAGTCGCGCAACCTCCTCGAGCAGGTCTTCGCGCAACGTGCAGCAAATGCAGCCGTTGCTCATCTCGACCAGTTTCTCTTCAGCGCGG > NC_002947/6111040‑6111336 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |