| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 501,674 | A→T | 7.3% | intergenic (+23/‑38) | PP_0412 → / → PP_0413 | polyamine ABC transportersubstrate‑binding protein/polyamine ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 501,674 | 0 | A | T | 7.3% | 161.5 / 2.6 | 55 | intergenic (+23/‑38) | PP_0412/PP_0413 | polyamine ABC transportersubstrate‑binding protein/polyamine ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base A (26/25); new base T (2/2); total (28/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.26e-01 | |||||||||||
AAGAAAGACATGCCGACCACGCCTGAGAACATTGCCAACCAGGTGCAGATCGACGTGGCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGCCGAGCGGGTCAACCGCTGGAAGGCGCAGGCGTTGATCGCGCCGCTG > NC_002947/501529‑501822 | aagaaagaCATGCCGACCACGCCTGAGAACATTGCCAACCAGGTGCAGATCGACGTGGCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAg < 8:95855/148‑1 (MQ=255)aagaaagaCATGCCGACCACGCCTGAGAACATTGCCAACCAGGTGAAGATCTACGTGGCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGc > 2:229023/1‑149 (MQ=255) agaaagaCATGCCGACCACGCCTGAGAACATTGCCAACCAGGTGCAGATCGACGTGGCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCaaaacc > 5:241336/1‑146 (MQ=255) aCATGCCGACCACGCCTGAGAACATTGCCAACCAGGTGCAGATCGACGTGGCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGcccc > 3:312900/1‑148 (MQ=255) cTGAGAACATTGCCAACCAGGTGCAGATCGACGTGGCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCTTTGCGGcccc < 1:80494/133‑1 (MQ=255) cTGAGAACATTGCCAACCAGGTGCAGATCGACGTGGCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCTTTGCGGcccc > 2:80494/1‑133 (MQ=255) gCCAACCAGGTGCAGATCGACGTGGCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCg < 6:384555/148‑1 (MQ=255) gCCAACCAGGTGCAGATCGACGTGGCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGc > 7:175088/1‑149 (MQ=255) ccAACCAGGTGCAGATCGACGTGGCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCg < 1:279871/140‑1 (MQ=255) ccAACCAGGTGCAGATCGACGTGGCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCg > 2:279871/1‑140 (MQ=255) cAGGTGCAGATCGACGTGGCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGc < 4:312900/149‑1 (MQ=255) cAGATCGACGTGGCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTg < 6:378991/148‑1 (MQ=255) cAGATCGACGTGGCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTg > 5:219244/1‑148 (MQ=255) cGACGTGGCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGGCATTGCAGTGc > 4:12916/1‑149 (MQ=255) gCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCaa < 1:229023/149‑1 (MQ=255) gCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCa > 3:283136/1‑148 (MQ=255) cGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAAc < 6:219244/149‑1 (MQ=255) gTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATTGCCATTGCAGTGCCCCTCAAc > 3:18257/1‑148 (MQ=255) cTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCGCCAATTCAGCCTGTATTCCGGAGTTCGCCATGGCCATTGCAGTGCCCCCCAACGaa < 2:141155/148‑1 (MQ=255) tGGGCCGACAACAGCGCGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCCCAAAGCGGCCCCCCATTAAGCCGGGATTGCGGAGGTGGCCATGGGCCTTGCAGTGCCCCGCAACGAAgg > 4:368250/1‑149 (MQ=255) ggCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGgcg > 1:356554/1‑149 (MQ=255) ccGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGgcg > 2:217589/1‑147 (MQ=255) ccGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGGATTGCGGAGTTCGACATGTCCATTGCAGTTCCCCTCAACGAAGGCGCa > 7:182801/1‑149 (MQ=255) caacaGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCCGCCCCCAAATCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTc > 5:345107/1‑149 (MQ=255) aacaGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGcc < 6:193510/111‑1 (MQ=255) aacaGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGcc > 5:193510/1‑111 (MQ=255) caGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCaa < 3:282456/149‑1 (MQ=255) aGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATgg < 3:158280/112‑1 (MQ=255) aGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATgg > 4:158280/1‑112 (MQ=255) agcagcTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGtctc < 5:282079/149‑1 (MQ=255) gcagcTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTAAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCCGTGGCCCGCAACGCAGGCGCAGGTCCattacctg > 7:183135/1‑142 (MQ=255) cagcTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGcccc > 2:33853/1‑121 (MQ=255) gcTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAagc < 4:283136/149‑1 (MQ=255) gAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGGCGCCAAGCGGGCCCCCCATAGGCCAGGATTTCGGGGGTAGCCAATGCCAATGCAGTGCCCCGCAACCCACGCGCACGTCCCAGTCAAAAACAgcg > 2:160393/1‑149 (MQ=255) cAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCCAAGCGGCCCCCCATTCAGCCGGTATTGGGGAGTTCGCCCTGGCCATTGCAGTGCCCCTCAACGAAGGCGCCGGGCCAAGTCTCAAGCAGCGCCGCCAACACg > 2:347073/1‑149 (MQ=255) cAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCAGGATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACg > 4:136181/1‑149 (MQ=255) aaggCCTGGGCGGCGAAGAAGTAATCGTGCAGTTTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTTGAGTGCCCCTCAACGAATGCTCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACg < 6:241336/145‑1 (MQ=255) aaCGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGc > 1:232428/1‑149 (MQ=255) aCGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGcc < 4:18257/149‑1 (MQ=255) gCCTGGGCGGCGAAGAATTAAACGTCCAGTGTGTGCGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGgcgc < 1:121342/113‑1 (MQ=255) gCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGgcgc > 2:121342/1‑113 (MQ=255) gCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGCCGa < 8:175088/149‑1 (MQ=255) gaagTACACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGCCGAGCGGGTCAACCGCt < 6:345107/149‑1 (MQ=255) gaagTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGCCGAGCGGGTCAACCGCt > 7:188929/1‑149 (MQ=255) aatgttCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGCCGAGCGGGTCAACCGCTGGAAg < 3:174083/144‑1 (MQ=255) aaaCGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGt > 7:54363/1‑104 (MQ=255) aaaCGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGt < 8:54363/104‑1 (MQ=255) aaaCGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGCCGAGCGGGTCAACCGCTGGAAg > 4:280969/1‑149 (MQ=255) aaCGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGCCGAGCGGGTCAACCGCTGGAAg < 2:232428/148‑1 (MQ=255) aaCGTCCAGTATGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGCCGAGCGGGTCAACCGCTGGAAgg > 3:283970/1‑149 (MQ=255) cGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCACCTCAAACACGCCGAGCGGGTCAACCGCTGGAAGgcg < 3:368250/149‑1 (MQ=255) ccAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGCCGAGCGGGTCAACCACTGGAAGGCGCAg < 2:356554/149‑1 (MQ=255) tgtgGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGCCGAGCGGGTCAACCGCTGGAAGGCGCAGGCGtt < 1:217589/148‑1 (MQ=255) gggggCCGCTTTGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGCCGAGCGGGTCAACCGCTGGAAGGCGCAGGCGt < 2:192095/144‑1 (MQ=255) gggggCCGCTTTGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTAGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGCCGAGCGGGTCAACCGCTGGAAGGCGCAGGCGt > 1:192095/2‑145 (MQ=255) ggggCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGCCGAGCGGGTCAACCGCTGGAAGGCGCAGGCGTTGATc < 8:106831/149‑1 (MQ=255) aaaGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGCCGAGCGGGTCAACCGCTGGAAGGCGCAGGCGTTGATCGCGCCGCt > 3:133644/1‑149 (MQ=255) aaGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGCCGAGCGGGTCAACCGCTGGAAGGCGCAGGCGTTGATCGCGCCGCTg < 1:160393/149‑1 (MQ=255) | AAGAAAGACATGCCGACCACGCCTGAGAACATTGCCAACCAGGTGCAGATCGACGTGGCGTTCTGGGCCGACAACAGCGAGCAGCTGGAGCAACGCTTCAACGCCTGGGCGGCGAAGAAGTAAACGTCCAGTGTGTGGGGCCGCAAAGCGGCCCCCAATTCAGCCTGTATTGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAACGAAGGCGCAGGTCCAAGTCTCAAGCAGCGCCTCAAACACGCCGAGCGGGTCAACCGCTGGAAGGCGCAGGCGTTGATCGCGCCGCTG > NC_002947/501529‑501822 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |