Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 6,175,610 G→T 6.9% I329I (ATC→ATA) ‡ atpD ← ATP synthase subunit beta

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029476,175,6100GT 6.9% 187.4 / 3.5 58I329I (ATC→ATA) ‡atpDATP synthase subunit beta
Reads supporting (aligned to +/- strand):  ref base G (27/27);  new base T (2/2);  total (29/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01

ATACCCAGGATCGCAATGATGTCCTTCAGCTCTTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAGTCGTCCGCAGGTACGTATACGGCCTGTACGGAGGTGATCGAACCTTCCTTGGTGGAG  >  NC_002947/6175464‑6175751
                                                                                                                                                  |                                                                                                                                              
aTACCCAGGATCGCAATGATGTCCTTCAGCTCTTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGa                                                                                                                                               >  6:135948/1‑148 (MQ=255)
 tACCCAGGATCGCAATGATGTCCTTCAGCTCTTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATa                                                                                                                                             <  3:283662/149‑1 (MQ=255)
    ccAGGATCGCAATGATGTCCTTCAGCTCTTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATAcc                                                                                                                                           >  5:274968/1‑148 (MQ=255)
    ccAGGATCGCAATGATGTCCTTCAGCTCTTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATAcc                                                                                                                                           >  1:222237/1‑148 (MQ=255)
    ccAGGATCGCAATGATGTCCTTCAGCTCTTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATAcc                                                                                                                                           >  2:196296/1‑148 (MQ=255)
        gATCGCAATGATGTCCTTCAGCTCTTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTATCTACCCAgcg                                                                                                                                      <  5:195716/149‑3 (MQ=255)
          tCGCAATGATGTCCTTCAGCTCTTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAg                                                                                                                                    >  6:320212/1‑149 (MQ=255)
            ccAATGATGTCCTACAGCTCTTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGc                                                                                                                                  <  8:141289/148‑1 (MQ=255)
              aaTGATGTCCTTCAGCTCTTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGa                                                                                                                                >  7:41478/1‑149 (MQ=255)
               atgatgTCCTTCAGCTCTTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGAt                                                                                                                               <  6:330976/149‑1 (MQ=255)
                       cTTCAGCTCTTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAgg                                                                                                                                       <  1:297092/133‑1 (MQ=255)
                       cTTCAGCTCTTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAgg                                                                                                                                       >  2:297092/1‑133 (MQ=255)
                       cTTCAGCTCTTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACgg                                                                                                                        <  8:41478/148‑1 (MQ=255)
                          cAGCTCTTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGa                                                                                                                      <  6:274968/147‑1 (MQ=255)
                            gCTCTTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGa                                                                                                                 <  7:277721/149‑1 (MQ=255)
                               ctTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAac                                                                                                               >  8:327168/1‑148 (MQ=255)
                               ctTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAac                                                                                                               >  5:219032/1‑148 (MQ=255)
                                tttATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAacga                                                                                                             >  3:373578/1‑149 (MQ=255)
                                     aGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTg                                                                                                        <  5:320212/149‑1 (MQ=255)
                                      gcgcTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTg                                                                                                        <  5:135948/148‑1 (MQ=255)
                                          tGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTc                                                                                                   >  7:212314/1‑149 (MQ=255)
                                              gAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAg                                                                                               >  2:80812/1‑149 (MQ=255)
                                                  aTACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTggg                                                                                           <  7:327168/149‑1 (MQ=255)
                                                   tACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACCAGAACGACGGTGGCGTCCAAGTggg                                                                                           <  1:196296/149‑1 (MQ=255)
                                                    aCTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTg                                                                                                        >  2:206038/1‑134 (MQ=255)
                                                    aCTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTg                                                                                                        <  1:206038/134‑1 (MQ=255)
                                                      tGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTg                                                                                                        >  3:313181/1‑132 (MQ=255)
                                                      tGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTg                                                                                                        <  4:313181/132‑1 (MQ=255)
                                                        aaCGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAgg                                                                                     >  1:179483/1‑149 (MQ=255)
                                                          cGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAggtg                                                                                   <  6:219032/149‑1 (MQ=255)
                                                           gCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTg                                                                                                        >  5:339174/1‑127 (MQ=255)
                                                           gCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTg                                                                                                        <  6:339174/127‑1 (MQ=255)
                                                             cACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTc                                                                                <  1:80812/149‑1 (MQ=255)
                                                                      tctcGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGAc                                                                       >  3:230612/1‑149 (MQ=255)
                                                                              tGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGggtcggt                                                               <  2:222237/149‑1 (MQ=255)
                                                                                cTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGggtcggtc                                                              >  6:277606/1‑148 (MQ=255)
                                                                                 tCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGggtcggtc                                                              >  5:121452/1‑147 (MQ=255)
                                                                                 tCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGggtcggtc                                                              <  6:121452/147‑1 (MQ=255)
                                                                                   gTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCaa                                                            <  5:277606/147‑1 (MQ=255)
                                                                                       ccGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAgtcgtc                                                      >  7:229492/1‑149 (MQ=255)
                                                                                                         aGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAGTCGTCCGCAGGTACGTATACGGc                                    <  7:298543/149‑1 (MQ=255)
                                                                                                              gcgcGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTgg                                                                                            >  4:299552/1‑88 (MQ=255)
                                                                                                              gcgcGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTgg                                                                                            <  3:299552/88‑1 (MQ=255)
                                                                                                               cgcgAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAGTCGTCCGCAGGTACGTATACGGCCTGTAc                              <  4:230612/149‑1 (MQ=255)
                                                                                                                    aGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGTCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAGTCGTCCGCAGGTACGTATACGGCCTGTACGGAgg                         <  8:212314/149‑1 (MQ=255)
                                                                                                                          gTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAGTCGTCCGCAGGTACGTATACGGCCTGTACGGAGGTGATc                    >  8:160078/1‑148 (MQ=255)
                                                                                                                               gTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAGTCGTCCGCAGGTACGTATACGGCCTGTACGGAGGTGATCGAAcct              <  4:373578/149‑1 (MQ=255)
                                                                                                                                   gTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAGTCGTCCGCAGGTACGTATACGGCCTGTACGGAGGTGATCGAAccttcct          >  1:3989/1‑149 (MQ=255)
                                                                                                                                       aCCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAGTCGTCCGCAGGTACGTATACGGCCTGTACGGAGGTGATCGAACCTTCCTtggt      >  8:14376/1‑149 (MQ=255)
                                                                                                                                        tcccTGGGTATCTACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAGTCGTCCGCAGGTACGTATACGGCCTGTACGGAGGTGATCGAACCTTCCTtgctg     >  6:337441/4‑149 (MQ=255)
                                                                                                                                         cccTGGGTATCTACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAGTCGTCCGCAGGTACGTATACGGCCTGTACGGAGGTGATCGAACCTTCCTtggtg     >  3:205948/3‑148 (MQ=255)
                                                                                                                                         cGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAgtcgtc                                                      >  6:390871/1‑99 (MQ=255)
                                                                                                                                         cGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAgtcgtc                                                      <  5:390871/99‑1 (MQ=255)
                                                                                                                                         cGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAGTCGTCCGCAGGTACGTATACGGCCTGTACGGAGGTGATCGAACCTTCCTtggtgg    <  7:14376/149‑1 (MQ=255)
                                                                                                                                           cTGGGTATCTACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAGTCGTCCGCAGGTACGTATACGGCCTGTACGGAGGTGATCGAACCTTCCTTGGTGGAg  <  5:337441/149‑1 (MQ=255)
                                                                                                                                           cTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAGTCGTCCGCAGGTACGTATACGGCCTGTACGGAGGTGATCGAACCTTCCTTGGTGGAg  >  6:257630/1‑149 (MQ=255)
                                                                                                                                                tAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAGTCGTCCGCAGGTAc                                             <  2:177341/101‑1 (MQ=255)
                                                                                                                                                tAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAGTCGTCCGCAGGTAc                                             >  1:177341/1‑101 (MQ=255)
                                                                                                                                                  |                                                                                                                                              
ATACCCAGGATCGCAATGATGTCCTTCAGCTCTTTATAGCGCTGCAGAACATACTGAACGCCACGAGCGGTCTCGTAGTGCTCGTTGCCGATCACGTTCGGGTCCAGCTGGCGCGAAGTCGAGTCCAGTGGGTCGACCGCTGGGTAGATACCCAGGGAGGCGATGTCACGGGACAGAACGACGGTGGCGTCCAAGTGGGCGAAGGTGGTCGCTGGCGACGGGTCGGTCAAGTCGTCCGCAGGTACGTATACGGCCTGTACGGAGGTGATCGAACCTTCCTTGGTGGAG  >  NC_002947/6175464‑6175751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: