Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 835,968 | G→C | 6.8% | L37L (CTC→CTG) | PP_0718 ← | sulfate transporter |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 835,968 | 0 | G | C | 6.8% | 186.4 / 3.2 | 59 | L37L (CTC→CTG) | PP_0718 | sulfate transporter |
Reads supporting (aligned to +/- strand): ref base G (27/28); new base C (2/2); total (29/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.15e-01 |
TCCGGGCCCAGCACCAGGATACGGCTGGGACCGAACAGGGCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTGGGTTGGGGCATGGTGTCGGCTCTGGGCGAGAAGGGCGCTGAACCTC > NC_002947/835828‑836113 | tCCGGGCCCAGCACCAGGATACGGCTGGGACCGAACAGGGCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAg > 1:143376/1‑149 (MQ=255) tCCGGGCCCAGCACCAGGATACGGCTGGGACCGAACAGGGCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAg < 3:350994/149‑1 (MQ=255) cGGGCCCAGCACCAGGATACGGCTGGGACCGAACAGGGCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGc > 5:231164/1‑149 (MQ=255) ccAGCACCAGGATACGGCTGGGACCGAACAGGGCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCcggcg > 7:47688/1‑149 (MQ=255) gCACCAGGATACGGCTGGGACCGAACAGGGCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGgcggcg < 1:180724/149‑1 (MQ=255) aCCAGGATACGGCTGGGACCGAACAGGGCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGAt < 2:143376/149‑1 (MQ=255) aCCAGGATACGGCTGGGACCGAACAGGGCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGAt < 3:123284/149‑1 (MQ=255) ggCTGGGACCGAACAGGGCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTggg > 4:218922/1‑148 (MQ=255) cTGGGACCGAACAGGGCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCtt < 3:90790/143‑1 (MQ=255) cTGGGACCGAACAGGGCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCtt > 4:90790/1‑143 (MQ=255) ggACCGAACAGGGCATAGGCCAGCAGGGGGATGGTGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGCTCACCACCATGctcgt > 4:295056/1‑124 (MQ=255) ggACCGAACAGGGCATAGGCCAGCAGGGGGATGGTGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGCTCACCACCATGctcgt < 3:295056/128‑5 (MQ=255) gACCGAACAGGGCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAg > 8:197997/1‑149 (MQ=255) cAGGGCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCt < 3:112497/149‑1 (MQ=255) aGGGCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAAGCTGCCtt > 6:317845/1‑149 (MQ=255) ggCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGgcggcg < 4:272445/121‑1 (MQ=255) ggCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGgcggcg > 3:272445/1‑121 (MQ=255) ggCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCCGCGATGTCCTTGGGTAGCCAGGCTGCCTTg > 7:277418/1‑148 (MQ=255) cATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAg < 1:21935/149‑1 (MQ=255) aGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGCTCACCACCATGctc > 1:128444/1‑108 (MQ=255) aGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGCTCACCACCATGctc < 2:128444/110‑3 (MQ=255) gcagGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAgg > 6:237875/1‑149 (MQ=255) ggATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGAc > 5:195124/1‑148 (MQ=255) tAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCggg > 3:192480/1‑148 (MQ=255) aGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGcc < 5:16250/110‑1 (MQ=255) aGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGcc > 6:16250/1‑110 (MQ=255) cGTACAGGCCATAGATACCGGGGACGCCTGAAGC‑CTCGCCGTAGTCGATGGCCACCGGCACGAGCATGTTGGCGAGCACCAGGCCGGCGTCGATGGCCTTGGGTAGCCTGGCTGCCATGTAGTGGAGCAGGGTGACCAGGCCGGGTAAc < 4:302156/149‑1 (MQ=255) cGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAg > 4:147693/1‑82 (MQ=255) cGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAg < 3:147693/82‑1 (MQ=255) cAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCa < 3:260990/125‑1 (MQ=255) cAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCa > 4:260990/1‑125 (MQ=255) gCCATAGATACCGGGGACGCCGGAAGCGCTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGt > 1:16088/1‑149 (MQ=255) ccATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTg < 2:16088/149‑1 (MQ=255) cATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGc < 8:47688/149‑1 (MQ=255) gATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGTTAGCCAAGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGt < 5:317845/149‑1 (MQ=255) aTACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTc < 7:197997/149‑1 (MQ=255) aCCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAgg > 6:109291/1‑115 (MQ=255) aCCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAgg < 5:109291/115‑1 (MQ=255) ggACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGa < 3:191122/149‑1 (MQ=255) c‑cTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTGGGTTgggg > 6:146774/1‑148 (MQ=255) ggCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTg > 2:222059/1‑87 (MQ=255) ggCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTg < 1:222059/87‑1 (MQ=255) gTAGGCGACGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTGGGTTGGGGCATGgtgt > 7:167245/1‑149 (MQ=255) ggCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTGGGTTGGGGCATGGTGTCgg > 2:165958/1‑149 (MQ=255) ggCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTGGGTTGGGGCATGGTGTCgg > 3:23376/1‑149 (MQ=255) gCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTGGGTTGGGGCATGGTGTCGGc > 7:74995/1‑149 (MQ=255) gCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTGGGTTGGGGCATGGTGTCGGc > 3:330057/1‑149 (MQ=255) cGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTGGGTTGGGGCATGGTGTCGGct < 5:146774/149‑1 (MQ=255) acgCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTGGGTTGGGGCATGGTGTCGGctct < 8:167245/147‑1 (MQ=255) gCCCACAGGCACGAGCATGGTGGTGAGCACGAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTggg < 3:248809/126‑1 (MQ=255) gCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTggg > 4:248809/1‑126 (MQ=255) cccACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTGGGTTGGGGCATGGTGTCGGCTCTgg < 6:195124/148‑1 (MQ=255) ccACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAgg > 2:257706/1‑80 (MQ=255) ccACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAgg < 1:257706/80‑1 (MQ=255) ccACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTGGGTTGGGGCATGGTGTCGGCTCTGGGc < 4:330057/149‑1 (MQ=255) ccACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTGGGTTGGGGCATGGTGTCGGCTCTGGGc > 3:146329/1‑149 (MQ=255) caGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTGGGTTGGGGCATGGTGTCGGCTCTGGGCgag < 8:74995/149‑1 (MQ=255) gCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCTTTGCCAGTCGAAACGAGTGGGTTGGGGCATGGTGTCGGCTCTGGGCGAGAAg < 5:237875/149‑1 (MQ=255) cGAGCATGGTGTTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTGGGTTGGGGCATGGTGTCGGCTCTGGGCGAGAAGGgc < 6:231164/149‑1 (MQ=255) ggtgAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTGGGTTGGGGCATGGTGTCGGCTCTGGGCGAGACGGGCGCTGAACCTc < 4:192480/149‑1 (MQ=255) | TCCGGGCCCAGCACCAGGATACGGCTGGGACCGAACAGGGCATAGGCCAGCAGGGGGATGATGGTAGCGTACAGGCCATAGATACCGGGGACGCCGGAAGC‑CTCGGCGTAGGCGATGCCCACAGGCACGAGCATGGTGGTGAGCACCAGGCCGGCGGCGATGTCCTTGGGTAGCCAGGCTGCCTTGTAGTGGAGCAGGGTGACCAGGCCGGGTAACCAGCGTTGCCAGTCGAAACGAGTGGGTTGGGGCATGGTGTCGGCTCTGGGCGAGAAGGGCGCTGAACCTC > NC_002947/835828‑836113 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |