| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 122,222 | A→C | 6.4% | intergenic (+32/+29) | katE → / ← PP_0116 | hydroperoxidase/putative lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 122,222 | 0 | A | C | 6.4% | 224.1 / 2.0 | 72 | intergenic (+32/+29) | katE/PP_0116 | hydroperoxidase/putative lipoprotein |
| Reads supporting (aligned to +/- strand): ref base A (33/34); new base C (2/3); total (35/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAGGACAAGGGGCTGTTGCTCGGGGATGAGCAGAAGGCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCGAACCCACTGTCAATCTTGCGCACGCGCTTTTCCAGCAAAGTCTTCA > NC_002947/122074‑122369 | gaggaCAAGGGGCTGTTGCTCGGGGATGAGCAGAAGGCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGa > 5:224044/1‑149 (MQ=255) gaCAAGGGGCTGTTGCTCGGGGATGAGCAGAAGGCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATg > 6:327705/1‑148 (MQ=255) aaGGGGCTGTTGCTCGGGGATGAGCAGAAGGCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAg > 7:13041/1‑148 (MQ=255) gCTGTTGCTCGGGGATGAGCAGAAGGCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCgg > 6:235379/1‑149 (MQ=255) gCTGTTGCTCGGGGATGAGCAGAAGGCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCgg < 3:291480/149‑1 (MQ=255) cTGTTGCTCGGGGATGAGCAGAAGGCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCggg < 8:13041/149‑1 (MQ=255) gATGAGCAGAAGGCAGTGGATGCCTTTGTCAGAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCcgcg > 2:103359/1‑147 (MQ=255) aTGAGCAGAAGGCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAg > 5:244220/1‑149 (MQ=255) tGAGCAGAAGGCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGc < 7:278964/149‑1 (MQ=255) aGCAGAAGGGAGGGGAGGCCTTTGTCAAAGCGGTAGAAGGCCTCCTGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCGGTTCATGCCTGACAAG‑‑GCCTTTTCGCGGGTAAAGCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCg < 5:100356/148‑1 (MQ=255) gCAGAAGGCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGtt > 7:132569/1‑149 (MQ=255) cAGAAGGCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGaa > 5:141487/1‑143 (MQ=255) cAGAAGGCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGaa < 6:141487/143‑1 (MQ=255) gAAGGCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACGCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTAc < 2:250586/149‑1 (MQ=255) gAAGGCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTAc > 8:217307/1‑149 (MQ=255) aGGCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTActg < 8:132569/149‑1 (MQ=255) ggCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTActg‑c < 2:91346/149‑1 (MQ=255) gCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCGGATGTAGGAGCCGGTTTACCCGCGCAGCGTTTActg‑ct > 1:378012/1‑149 (MQ=255) cAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTActg‑ct > 6:334599/1‑148 (MQ=255) aGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAGCCTCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTActg‑ct < 1:113340/149‑1 (MQ=255) tGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTTAAACCCCGACGGATGTAGGGGCGGGTTTAACCCCGAAGCGTTTActgggttgt > 8:54137/1‑143 (MQ=255) ccTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGAc < 7:217307/149‑1 (MQ=255) cTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCCGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGAcc > 2:350465/1‑149 (MQ=255) tttGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGAc > 6:118965/1‑147 (MQ=255) tttGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGAc > 5:359817/1‑147 (MQ=255) tCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGca < 5:235379/148‑1 (MQ=255) cAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCTGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGcac < 6:244220/148‑1 (MQ=255) aaaGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTTGGGGCGGGGTTTCCCGCCAAGCGTTTAATG‑CTGAATCGGGACCCGcacca > 1:378164/1‑149 (MQ=255) aGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCaccacc > 7:13596/1‑149 (MQ=255) gCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCt < 6:323542/149‑1 (MQ=255) gCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCt < 5:334599/149‑1 (MQ=255) ggTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CAGATCCGGGACCAGcacaaacggt > 6:265944/1‑142 (MQ=255) ggCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCgg > 7:108746/1‑147 (MQ=255) aCCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCagcga < 8:108746/149‑1 (MQ=255) cGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCa < 5:36083/143‑1 (MQ=255) cGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCa > 6:36083/1‑143 (MQ=255) tgtgGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTg < 6:224044/149‑1 (MQ=255) gggAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCtgt > 1:340716/1‑129 (MQ=255) gggAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCtgt < 2:340716/129‑1 (MQ=255) gggAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGAt > 6:369802/1‑149 (MQ=255) ggAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATc > 7:11744/1‑149 (MQ=255) cGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGAt < 5:369802/149‑1 (MQ=255) ggcggcggcTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGGGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGAtgcttc < 5:327705/149‑1 (MQ=255) cggcggcTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGAtgcttctg > 7:243767/1‑149 (MQ=255) cggcTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGAtgcttctgctt < 1:350465/149‑1 (MQ=255) tGAAGCTGTTCCTGCCTGACAAT‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGc < 6:358886/149‑1 (MQ=255) gAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCt < 4:376500/107‑1 (MQ=255) gAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCt > 3:376500/1‑107 (MQ=255) aaGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGc < 6:359817/147‑1 (MQ=255) aaGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTc < 7:54137/149‑1 (MQ=255) ctgcctgACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCGAACCCACt < 3:375641/149‑1 (MQ=255) aCAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCTCCACCTGTGCCGGCAGCGAGCTCTGGATCTGATGCTTCTGCTTCAGCTCGAACCCACTGTCAAt < 5:265944/148‑1 (MQ=255) cAAG‑‑GCCTTTTCGGGGGTAAAGCCCCTCCTGCTGTCGGAGGGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCGAACCCACTGTCAATCt < 1:376535/149‑1 (MQ=255) cAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCt < 4:101316/107‑1 (MQ=255) cAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCt > 3:101316/1‑107 (MQ=255) aaG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCGAACCCACTGTCAATCtt > 6:384179/1‑149 (MQ=255) acgcccTTTCCGCGGG‑AAACCCCCGCCCTCTGGATGAGGCGGTTTAACCGGGTATGGTTTACTGCCTCTTGCGGCACCCCAACAACCGGGCCTGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCGAACCCACTGTCAATCtt < 1:103359/145‑1 (MQ=255) taaacgcttCGCGGGTAAACCCGCTCCTACATCAGGAGGGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCGAACCCACTGTCAATCTTg > 2:23268/8‑149 (MQ=25) gCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCGAACCCACTGTCAATCTTgcg > 4:96945/1‑149 (MQ=255) acgcttCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCGAACCCACTGTCAATCTTgcgc < 5:1396/145‑1 (MQ=255) ttttCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGcaccac < 8:351061/80‑1 (MQ=255) ttttCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGcaccac > 7:351061/1‑80 (MQ=255) ttttCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGa > 2:131653/1‑103 (MQ=255) ttttCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGa < 1:131653/103‑1 (MQ=255) ttttCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCGAACCCACTGTCAATCTTGCGCAc > 8:117961/1‑149 (MQ=255) gcgGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACGTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCGTCAGCTCGATCCCACTGTCAATCTTGCGCACgcgcg > 8:88144/1‑148 (MQ=255) gcgGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCGAACCCACTGTCAATCTTGCGCACgcgc < 7:117961/148‑1 (MQ=255) ggTAAACCCGCTCCTACATCAGGAGGGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCGAACCCACTGTCAATCTTGCGCACGCGCtttt > 1:106845/1‑149 (MQ=38) gTAAACCCGCTCCTACATCAGGAGGGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCGAACCCACTGTCAATCTTGCGCACGCGCTTTTc < 1:23268/149‑1 (MQ=38) accccccTCCTGATGTAGGAGCGGGTTAACCCTCGAAGCGTTTACTG‑CTGATGTGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCGAACCCACTGTCAATCTTGCGCACGCGCTTTTCCa < 8:122206/146‑1 (MQ=255) aaCCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCg < 4:136054/114‑1 (MQ=255) aaCCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCg > 3:136054/1‑114 (MQ=255) cccccTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCGAACCCACTGTCAATCTTGCGCACGCGCTTTTCCAGc > 4:6037/1‑148 (MQ=255) aTGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCGAACCCACTGTCAATCTTGCGCACGCGCTTTTCCAGCAAAGTCTTCa < 5:118965/148‑1 (MQ=255) | GAGGACAAGGGGCTGTTGCTCGGGGATGAGCAGAAGGCAGTGGATGCCTTTGTCAAAGCGGTAGAAGGCCACCGGGTGTGGGAGCGGGAGGCGGCGGCTGAAGCTGTTCCTGCCTGACAAG‑‑GCCTTTTCGCGGGTAAACCCCCTCCTGATGTAGGAGCGGGTTTACCCGCGAAGCGTTTACTG‑CTGATGCGGGACCAGCACCACCTGTGCCGGCAGCGAGCGCTGGATCTGATGCTTCTGCTTCAGCTCGAACCCACTGTCAATCTTGCGCACGCGCTTTTCCAGCAAAGTCTTCA > NC_002947/122074‑122369 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |