| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 953,557 | G→T | 6.4% | E122D (GAG→GAT) | cyoC → | cytochrome bo terminal oxidase subunit III |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 953,557 | 0 | G | T | 6.4% | 302.1 / 8.6 | 93 | E122D (GAG→GAT) | cyoC | cytochrome bo terminal oxidase subunit III |
| Reads supporting (aligned to +/- strand): ref base G (40/47); new base T (2/4); total (42/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.13e-01 | |||||||||||
GAAACGCTGTTCCTGCTGCTGTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCA > NC_002947/953414‑953705 | gAAACGCTGTTCCTGCTGCTGTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTcc < 1:372574/148‑1 (MQ=255) aaaCGCTGTTCCTGCTGCTGTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCAt < 8:349379/149‑1 (MQ=255) aaCGCTGTTCCTGCTGCTGTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAACTCATAGATTTCCATc < 4:319316/149‑1 (MQ=255) aaCGCTGTTCCTGCTGCTGTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATc < 7:358205/149‑1 (MQ=255) aCGCTGTTCCTGCTGCTGTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCa > 5:176560/1‑149 (MQ=255) cGCTGTTCCTGCTGCTGTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAACTCATAGATTTCCATcgc < 6:59454/149‑3 (MQ=255) cGCTGTTCCTGCTGCTGTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCAc < 4:298710/149‑1 (MQ=255) cGCTGTTCCTGCTGCTGTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCAc > 4:185522/1‑149 (MQ=255) cGCTGTTAGTGCTGATGTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCAc < 8:261039/149‑1 (MQ=255) gCTGTTCCTGCTGCTGTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCAcc < 4:1872/149‑1 (MQ=255) tGTTCCTGCTGCTGTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCt > 3:34287/1‑148 (MQ=255) ttCCTGCTGCTGTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGAt < 6:7485/149‑1 (MQ=255) ctgctgctgTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAg > 3:139133/1‑149 (MQ=255) ctgctgTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGc > 4:124040/1‑147 (MQ=255) ctgctgTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGACTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGc > 2:21097/1‑147 (MQ=255) gctgTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAgg > 8:293118/1‑149 (MQ=255) ctctctCACCGTCGGCTTCGACATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGACGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCg < 8:347050/144‑1 (MQ=255) cTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCg < 3:264918/149‑1 (MQ=255) cTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCcgcagc > 6:36277/1‑149 (MQ=255) ggCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCcgcagcgcag > 4:109327/1‑149 (MQ=255) gCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑t < 6:176560/149‑1 (MQ=255) ccATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTc < 8:202327/149‑1 (MQ=255) aaGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCgg < 5:36277/148‑1 (MQ=255) tGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGcttc < 4:139133/149‑1 (MQ=255) gCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTg > 2:92314/1‑149 (MQ=255) aaGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTgg > 7:68508/1‑148 (MQ=255) aaGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTgg > 2:246930/1‑148 (MQ=255) aaGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTgg > 8:197747/1‑148 (MQ=255) gAAAGGAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGGAGGCTTCATC‑GCGATTGAAATCTATGAGTTCCATGACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGATGGCTTCCTGTCGGGCTTCTTCGCCCTggta < 1:38816/149‑1 (MQ=255) gAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTggtag > 2:156698/1‑149 (MQ=255) gAAAGCAGGTGTACTGGGCGGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGAGGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTGCTTCGCCCTggtag < 4:352990/149‑1 (MQ=255) gtgtACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGc > 6:310367/1‑113 (MQ=255) gtgtACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGc < 5:310367/113‑1 (MQ=255) gtgtACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCAc > 2:153466/1‑149 (MQ=255) gtACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTggtaggt < 1:11075/141‑1 (MQ=255) gtACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTggtaggt > 2:11075/1‑141 (MQ=255) tACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACgg > 8:98588/1‑148 (MQ=255) cTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTc < 7:293118/148‑1 (MQ=255) tGGGCTGGTTGGCTGTTACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCcg < 8:149509/95‑1 (MQ=255) tGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCcg > 7:149509/1‑95 (MQ=255) tGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTg > 3:76992/1‑149 (MQ=255) gggCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTg > 1:73839/1‑148 (MQ=255) gTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGt < 3:109327/147‑1 (MQ=255) tgtgACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGActgctg > 7:113331/1‑149 (MQ=255) aCCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTc < 1:246930/148‑1 (MQ=255) aCCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTc < 8:113331/148‑1 (MQ=255) cTTCCTGTTCGGTGCAGGCTTCATCGGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTACTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCt > 1:197261/1‑148 (MQ=255) cTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGc < 5:389010/131‑1 (MQ=255) cTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGc > 6:389010/1‑131 (MQ=255) cTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGa > 7:244774/1‑149 (MQ=255) cTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGa > 1:50080/1‑149 (MQ=255) cTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCt < 1:232379/148‑1 (MQ=255) cTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCt < 3:124040/148‑1 (MQ=255) cTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTg < 7:197747/149‑1 (MQ=255) cTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTg < 5:57596/149‑1 (MQ=255) tGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTg > 2:33335/1‑148 (MQ=255) tGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTg > 8:296090/1‑148 (MQ=255) ttCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGa < 7:125821/148‑1 (MQ=255) ttCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGAt > 1:93601/1‑149 (MQ=255) ttCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGAt < 1:21097/149‑1 (MQ=255) ttCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGAt < 7:98588/149‑1 (MQ=255) ttCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGAt < 1:156698/149‑1 (MQ=255) ggTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACg > 4:345507/1‑115 (MQ=255) ggTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACg < 3:345507/115‑1 (MQ=255) ggTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATgg < 3:185522/148‑1 (MQ=255) gTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑t < 8:226518/74‑1 (MQ=255) gTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑t > 7:226518/1‑74 (MQ=255) gCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAAt > 7:163871/1‑149 (MQ=255) cAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGt < 8:86536/121‑1 (MQ=255) cAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGt > 7:86536/1‑121 (MQ=255) cAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAAt < 1:92314/148‑1 (MQ=255) ttCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCt < 6:353010/110‑1 (MQ=255) ttCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCt > 5:353010/1‑110 (MQ=255) cATC‑GCTATGGAAATCTATGAGTTCCATCAACTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTATGTACCCACGGTCTGCACGTGACTGCTTGTCTGATCTGGATGGCAATCatgat < 4:34287/147‑1 (MQ=255) cATC‑GCGATGGAAATCTATTTGTTCCATCACCTGATCAGCGAGGGCTTCGGGCCGCAGCGCAG‑TGGCTTGCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGGAATCatga < 2:197261/146‑1 (MQ=255) cATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCatgatg < 2:50080/148‑1 (MQ=255) tC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTAc < 8:163871/149‑1 (MQ=255) tC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTAc > 8:171799/1‑149 (MQ=255) ggtgATGGAACTCATAGATTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTAcc > 3:239561/4‑97 (MQ=38) ggtgATGGAACTCATAGATTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTAcc < 4:244474/94‑1 (MQ=38) ggtgATGGAACTCATAGATTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTAcc < 4:239561/94‑1 (MQ=38) ggtgATGGAACTCATAGATTTCCATCACCTGATCAGCGACGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTAcc > 3:244474/4‑97 (MQ=37) gcgATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTAcc > 1:133913/1‑148 (MQ=255) cgATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTAc > 2:2297/1‑146 (MQ=255) cgATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAg < 7:296090/149‑1 (MQ=255) tGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGAt > 6:115667/1‑148 (MQ=255) ggAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATc < 8:244774/148‑1 (MQ=255) aaaTCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATcaac < 7:171799/149‑1 (MQ=255) aaaTCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATcaac < 1:2297/149‑1 (MQ=255) cTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTCCACGTGACTGCTGGTCTGATATGGATGGCAATCATGATATACCAAAAaaacaaa > 8:237612/1‑147 (MQ=255) tGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGActgctg > 4:124391/1‑104 (MQ=255) tGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGActgctg < 3:124391/104‑1 (MQ=255) aGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACgg < 1:153466/148‑1 (MQ=255) gTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCa > 4:321259/1‑149 (MQ=255) | GAAACGCTGTTCCTGCTGCTGTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATC‑GCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAG‑TGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCA > NC_002947/953414‑953705 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |