| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,039,262 | G→C | 6.7% | R45G (CGC→GGC) | PP_0897 ← | class 1 fumarate hydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,039,262 | 0 | G | C | 6.7% | 271.1 / 6.3 | 85 | R45G (CGC→GGC) | PP_0897 | class 1 fumarate hydratase |
| Reads supporting (aligned to +/- strand): ref base G (37/42); new base C (4/2); total (41/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.23e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.45e-01 | |||||||||||
GTCGTCGACGCTCATGGTGGCGCCATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAGCGCGCTCCTC > NC_002947/1039116‑1039408 | gtcgtcGACGCTCATGGTGGCGCCATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTg > 3:77847/1‑149 (MQ=255) tcgtcgACGCTCATGGTGGCGCCATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTg < 4:77847/148‑1 (MQ=255) cgtcgACGCTCATGGTGGCGCCATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTgca < 4:138384/149‑1 (MQ=255) gACGCTCATGGTGGCGCCATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTgcagca < 3:360248/148‑1 (MQ=255) gACGCTCATGGTGGCGCCATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGcagcag > 2:267270/1‑149 (MQ=255) aCGCTCATGGTGGCGCCATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAgg < 6:52266/149‑1 (MQ=255) aTGGTGGCTCCATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTTATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTc < 4:285423/149‑1 (MQ=255) aTGGTGGCGCCATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTc > 4:28584/1‑149 (MQ=255) tggtggCGCCATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCCTGCTGCACGCGATTcc < 1:341458/149‑1 (MQ=255) tggCGCCATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGACGGAATCGCCTGCTGCACGCGATTccatc < 8:7408/149‑4 (MQ=255) ggCGCCATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCAc > 8:93743/1‑149 (MQ=255) gcgcCATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGACGGGGGTGGCCGGTGGCGAGGCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTc > 1:117875/1‑149 (MQ=255) gcCATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTgcagca < 5:258153/133‑1 (MQ=255) gcCATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTgcagca > 6:258153/1‑133 (MQ=255) ccATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACg > 6:59428/1‑146 (MQ=255) cATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGa > 8:141084/1‑136 (MQ=255) cATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGa < 7:141084/136‑1 (MQ=255) aTCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGa > 4:165800/1‑148 (MQ=255) cAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGc > 7:79759/1‑149 (MQ=255) cACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGt < 8:74373/149‑1 (MQ=255) gTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGAGTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTgcagc > 3:110695/1‑117 (MQ=255) gTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGACTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTgcagc < 4:110695/117‑1 (MQ=255) tCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCAt > 4:110910/1‑149 (MQ=255) gcttGCCCACGCGGATGAACACGGTGAGGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCt < 7:131482/123‑1 (MQ=255) ccATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCt > 8:131482/1‑126 (MQ=255) cATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATg < 7:93743/148‑1 (MQ=255) aTGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGc < 2:109520/149‑1 (MQ=255) cACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGa > 3:368160/1‑149 (MQ=255) cACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGa < 8:357148/149‑1 (MQ=255) cACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGa > 5:198074/1‑149 (MQ=255) aCGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGCCCGGTGGC‑‑‑GCCCATCCGCGAGTTGATCAGGATCTCGGCCATCGAATCGCCTGCAGCAGGCGATTCCTAACGCAGATAGGCCTCTTGCATGGCCTGGa > 1:120493/1‑148 (MQ=255) ggATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGaaa > 4:186105/1‑149 (MQ=255) acacGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACg < 3:28584/149‑1 (MQ=255) cacGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATACCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACgg < 1:267270/149‑1 (MQ=255) ggTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGggt > 6:56193/1‑149 (MQ=255) tGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGggtgg > 3:207115/1‑149 (MQ=255) tGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGggtgg < 8:79759/149‑1 (MQ=255) ccGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGgta < 4:13882/148‑1 (MQ=255) gATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGgtag > 7:355539/1‑148 (MQ=255) cGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTAc > 2:319773/1‑146 (MQ=255) ggTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACgaga < 4:368160/149‑1 (MQ=255) gtgtCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCa > 4:114581/1‑93 (MQ=255) gtCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACgggg < 7:18771/133‑1 (MQ=255) gtCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACgggg > 8:18771/1‑133 (MQ=255) tGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTg > 7:198871/1‑149 (MQ=255) gCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTg < 8:355539/147‑1 (MQ=255) cAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAg < 3:314599/149‑1 (MQ=255) aGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCGGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAgg > 5:269693/1‑149 (MQ=255) aC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGGGAGTTGTTCAGTAGCTGGGCGATGGATTCGCGTGCAGCAGGCGATTCCTCAGGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCgg < 2:120493/149‑1 (MQ=255) c‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTAc < 6:107729/126‑1 (MQ=255) c‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTAc > 5:107729/1‑126 (MQ=255) ggTTGC‑‑‑GCACATGCGCGAGTTGATACGGCTCTGGGCGTTGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGTTAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGctct < 8:304803/149‑1 (MQ=255) ggTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGctct < 5:56193/149‑1 (MQ=255) ggTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGctct > 2:179635/1‑149 (MQ=255) tGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTg > 7:21460/1‑148 (MQ=255) ggagcACATGCGCGACTTTCTCAGGAGCTGGGCTATGGAATCGCGTGCAGCAGCCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGAGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGaa < 4:45341/146‑1 (MQ=255) gcACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGa < 8:114700/67‑1 (MQ=255) cgcgAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCGGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGgtcgtc < 6:269693/149‑1 (MQ=255) gAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTcttg > 5:313189/1‑149 (MQ=255) aGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTcttgc < 6:313189/149‑1 (MQ=255) gTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTcttgct > 1:299767/1‑149 (MQ=255) gTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTcttgct < 2:299767/149‑1 (MQ=255) tCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGAt < 5:59428/148‑1 (MQ=255) tCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGAt > 3:29726/1‑148 (MQ=255) ggATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACg < 3:165800/149‑1 (MQ=255) ggCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATg < 8:21460/148‑1 (MQ=255) gCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAAt > 1:56100/1‑119 (MQ=255) gCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAAt < 2:56100/119‑1 (MQ=255) gCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCa < 4:29726/149‑1 (MQ=255) cGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGAGCGTCGCCGACGCCCTg > 3:74179/1‑115 (MQ=255) cGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGAGCGTCGCCGACGCCCTg < 4:74179/115‑1 (MQ=255) gATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAgg < 6:57498/121‑1 (MQ=255) gATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAgg > 5:57498/1‑121 (MQ=255) gATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCa > 7:177569/1‑137 (MQ=255) gATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCa < 8:177569/137‑1 (MQ=255) gaggAATCGCCTGCTGCACGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAgcg > 4:179788/3‑149 (MQ=255) acggAATCGCGTGCAGCAGGCGATTCGTCACGCAGATAGGCCTCGTGCAGGGCCTGGATGAAATCGACGGGGTGGGAGTACGAGATGAATTGCAGGGCGGCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAgcg < 7:259754/147‑1 (MQ=255) tGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAgcgc < 3:110910/149‑1 (MQ=255) tGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAgcgc < 3:186105/149‑1 (MQ=255) ggAATCGCCTGCTGCACGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAgcgcg > 7:30537/1‑149 (MQ=255) gAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGTTCACGGTCATGCAgcgcgc > 5:332064/1‑149 (MQ=255) gAATCGCCTGCTGCACGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAgcgcgc > 5:92231/1‑149 (MQ=255) aaTCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAGCGCGct > 6:182540/1‑149 (MQ=255) tCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGa < 5:106056/108‑1 (MQ=255) tCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGa > 6:106056/1‑108 (MQ=255) gcgTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTCCTTGAACACGGGCATGCACCGCGcgccac > 6:353704/1‑147 (MQ=255) | GTCGTCGACGCTCATGGTGGCGCCATCCCAGCGCACGTCCATGCCCACGCGGATGAACACGGTGACGATACCGGTGTCCTGGCAGATTGGAC‑‑‑GATGGCCGGTGGC‑‑‑GCACATGCGCGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAGCGCGCTCCTC > NC_002947/1039116‑1039408 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |