| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,070,263 | G→C | 7.6% | intergenic (+63/+79) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,070,263 | 0 | G | C | 7.6% | 281.0 / 11.4 | 92 | intergenic (+63/+79) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base G (46/39); new base C (4/3); total (50/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.68e-01 | |||||||||||
ATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GT‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGAGCACCGGCAGTA > NC_002947/1070117‑1070406 | aTCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCgcgg > 5:192784/1‑149 (MQ=255)aTCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCgcgg > 2:309931/1‑149 (MQ=255) tcGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCgcgggcg > 5:297830/1‑149 (MQ=255) ggTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCgcggg < 1:76519/145‑1 (MQ=255) ggTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCccgcgcgg < 8:130399/148‑1 (MQ=39) gTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGgcggcg > 6:272459/1‑149 (MQ=255) aTGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTc < 6:219034/149‑1 (MQ=255) aTGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTc < 8:208470/149‑1 (MQ=255) gCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCAGT‑‑GA‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCGCGa > 1:187595/1‑149 (MQ=39) gCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GT‑‑GATATCGAGCGCCGCGCGGGCGGCGCTCGa > 6:269259/1‑149 (MQ=255) cTGATCCCTGCATGGATCGCTGTGCTTGGGGTGGCTTTCAAGATGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGa < 8:307889/148‑1 (MQ=38) cTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGAGCTGATC‑GTGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGa < 6:212526/148‑1 (MQ=38) tGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGAtc > 5:305163/1‑149 (MQ=255) tGATCCCGGCATGGATCGCTGTGCTGAGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGATCTTAAGGGGTATGCCGTTAGGTTTTAGGAGCA‑‑T‑‑GTGAG‑‑ATCTATCGCCGCGCTGACGGCGCTc > 8:241522/1‑145 (MQ=255) aTCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCgcgggcg < 7:142676/137‑1 (MQ=255) aTCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCgcgggcg > 8:142676/1‑137 (MQ=255) cATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCT‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCg < 8:55775/149‑1 (MQ=255) aTGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGa < 6:74635/149‑1 (MQ=255) gATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTGGATCTCACAGGCGATg > 3:225259/1‑148 (MQ=255) aTCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGa > 3:34069/1‑148 (MQ=255) gctgtgctgtGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGc < 6:245630/149‑1 (MQ=255) tgtgctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCt < 4:34069/149‑1 (MQ=255) gctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTaaa < 3:130857/149‑1 (MQ=255) ctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAg < 8:337855/149‑1 (MQ=255) ctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAg < 6:305163/149‑1 (MQ=255) tgtgGGTGTCTTTCATGATGAAGAAGGCTCGCCTGGCCAAGGGTTGATG‑GGGTTTGTTCGTAAGGGTTATGCCGTTAGGTTTTCGGCGCT‑‑TTGGA‑‑G‑‑ATCTTCCGCCGGGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTaaa < 6:57436/147‑1 (MQ=255) gtgggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑CGGATTGTTAGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTCAG‑‑ATCGATCGCCCCGCGGGCGGAGCTAGATCTCACAAGCGATGAAAGCCTAAAgg > 6:340040/1‑148 (MQ=255) ggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCAt > 7:201185/1‑148 (MQ=255) ggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCAt < 8:201185/148‑1 (MQ=255) tggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGACCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGc > 1:264205/1‑149 (MQ=38) tggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCg < 5:272459/149‑1 (MQ=255) tggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCAGGCg > 2:330928/1‑149 (MQ=255) tggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGGTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGCGCTCCCAGGCGATGAAAGCCTAAAGGCATGCg > 2:336066/1‑149 (MQ=38) gCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTAAGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTc > 1:107739/1‑149 (MQ=255) cTTTCACGCGGAAGAAGGCTCGCCAGGCCACGGGCTGATC‑GGGTTTGTTCGTATGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑AGCGTGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCt < 2:187595/149‑1 (MQ=37) cTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCt > 1:109519/1‑149 (MQ=255) tttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGCTTTCATCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCTc < 1:14295/111‑1 (MQ=21) tttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGCTTTCATCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCTc > 2:14295/1‑111 (MQ=21) tccaGCTGAAGAAGGCTCGCCAGGCCATGGGGTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTg < 4:249211/144‑1 (MQ=38) aGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTggcggc > 7:168941/1‑149 (MQ=255) gaagaaGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCAt < 1:50465/133‑1 (MQ=255) gaagaaGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCAt > 2:50465/1‑133 (MQ=255) gaagaaGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCt > 6:206064/1‑148 (MQ=255) gaagaaGGCTCGCCAGGCCAAGGGCTGATC‑GGGCTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCt > 6:210469/1‑148 (MQ=255) agaagGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGGTTTCGGCGCCTTT‑‑GA‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGAc < 5:269259/149‑1 (MQ=38) tCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCTCGATCTca > 7:182326/1‑100 (MQ=25) tCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCTCGATCTca < 8:182326/100‑1 (MQ=25) gCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTcccc > 3:341054/1‑149 (MQ=255) gCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTccc < 8:168941/148‑1 (MQ=255) cAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCtt > 8:114813/1‑149 (MQ=255) aGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTc > 7:116013/1‑149 (MQ=255) aGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTc > 1:239701/1‑149 (MQ=255) aaGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGc > 6:379151/1‑149 (MQ=255) aTC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTAGATCTCACAGGCGATGAAAGCCTAAATGCAAGCGTCAGGCCGCCCAGACCCGTTCCCCCTCCATGCCCcaca > 8:126635/1‑147 (MQ=25) gggTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgct > 1:296063/1‑149 (MQ=255) tttGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGcc > 3:10553/1‑149 (MQ=255) ttCTTAAGGGGTATGCCGTTAGGTTTTCGGCTCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTcc < 5:340040/148‑1 (MQ=38) ttCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCg < 7:126635/149‑1 (MQ=255) tCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCg < 4:10553/148‑1 (MQ=255) cGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGc < 6:192784/148‑1 (MQ=255) gTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGcc > 1:90679/1‑148 (MQ=255) tAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGcc > 1:20221/1‑147 (MQ=255) tAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCaa < 1:309931/149‑1 (MQ=255) aGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgc < 7:114813/149‑1 (MQ=255) aGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAg > 8:95876/1‑148 (MQ=255) tGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTGCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcacgca > 1:323739/1‑147 (MQ=255) ccGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTGCCATGCCCCTCCATGCTGCCTCCGCCACGCACGCACCgt > 7:329438/1‑149 (MQ=38) cGTTAGGTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtg < 2:264205/149‑1 (MQ=255) ggTTTTCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTa < 5:210469/149‑1 (MQ=255) ttttCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACa < 5:206064/149‑1 (MQ=255) ttttCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACa < 6:297830/149‑1 (MQ=255) ttCGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGGTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGGTCCCCTTCCCTGGCCCTCAATGCTGGCTCCGCCAAGCACGCACAGGGGGGTACCGc > 2:128507/1‑149 (MQ=37) cGGCGCC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCaa > 2:224229/1‑149 (MQ=255) gcgcC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtggt < 2:329261/138‑1 (MQ=255) gcgcC‑‑T‑‑GTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtggt > 1:329261/1‑138 (MQ=255) gcgcC‑‑T‑‑GTGAG‑‑ATCGACCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACTCGTTCCCCTTCCATGCCCCTCAATTCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCaaga < 7:241522/149‑3 (MQ=38) gtgag‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCCTTCCCCTTCCATGCCCCTCAAAGCTGCCTCCGCCACGCACGCACAGTCGTGTACAGCAACACCGTAg > 6:385907/5‑149 (MQ=38) tgag‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGc > 8:35465/4‑149 (MQ=255) tgag‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGc < 2:107739/146‑1 (MQ=255) tgag‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGc > 3:182947/4‑149 (MQ=255) gag‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtggt > 7:128745/3‑130 (MQ=255) gag‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtggt < 8:128745/128‑1 (MQ=255) ag‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGa < 2:239701/148‑1 (MQ=255) ag‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGa < 8:116013/148‑1 (MQ=255) tCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGAGCa > 6:324613/1‑149 (MQ=255) tCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAaca > 6:248898/1‑137 (MQ=255) tCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAaca < 5:248898/137‑1 (MQ=255) cGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTGCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCCCAGTGGTGGACAGCAACACCGTAGCGAGCAc > 1:377398/1‑149 (MQ=255) gAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGAGCAcc > 7:199766/1‑149 (MQ=255) gAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCCGAAAACCTAACGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCGCAGTGGTGTACAGCAACACCGTAGCGAGCAcc > 7:238376/1‑149 (MQ=38) cgccgcGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCg > 3:91533/1‑103 (MQ=255) cgccgcGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCg < 4:91533/103‑1 (MQ=255) ccgcGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGAGCACCGGCAg > 8:71407/1‑149 (MQ=255) cgcgcgGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGAGCACCGGCAg > 5:283922/1‑148 (MQ=255) cgcgcgGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGAGCACCGGCAGt < 2:109519/149‑1 (MQ=255) cgcgcgGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGAGCACCGGCAGt < 5:379151/149‑1 (MQ=255) gcgcgGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGcaca < 5:67041/112‑1 (MQ=255) gcgcgGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGcaca > 6:67041/1‑112 (MQ=255) gcgcgGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGAGCACCGGCAGTa > 1:14402/1‑149 (MQ=255) | ATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATC‑GGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑T‑‑GT‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAACACCGTAGCGAGCACCGGCAGTA > NC_002947/1070117‑1070406 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |