Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,135,614 | T→A | 8.8% | E454V (GAA→GTA) ‡ | PP_0997 ← | sigma‑54 dependent transcriptional regulator/sensory box protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,135,614 | 0 | T | A | 8.8% | 160.3 / 5.8 | 57 | E454V (GAA→GTA) ‡ | PP_0997 | sigma‑54 dependent transcriptional regulator/sensory box protein |
Reads supporting (aligned to +/- strand): ref base T (27/25); new base A (2/3); total (29/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.70e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.48e-01 |
CCCGGGTATTCCATATTTACGCAGCCTCTGCGCGATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCCGCGGCGCGGAAGATCACGTTCTGCAACTGGCGCACATTGCCCGGCCAAGG > NC_002947/1135475‑1135759 | cccGGGTATTCCATATTTACGCAGCCTCTGCGCGATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTg < 1:213076/148‑1 (MQ=255) ccGGGTATTCCATATTTACGCAGCCTCTGCGCGATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTgg < 1:265313/148‑1 (MQ=255) cGGGTATTCCATATTTACGCAGCCTCTGCGCGATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGGAACAGGCTgtag < 2:103100/149‑4 (MQ=255) gggTATTCCATATTTACGCAGCCTCTGCGCGATAGCCGTGTGCGAAGTTTGCAAGCGCACGGCCAGTTGCCGTGTTGACGGCTAGCTGGCGTATAAGCGCTGTAACAGTTCGAGCGCGAACTCACCTACAGCCTGTTCCAGGCTGGcc > 6:204727/1‑148 (MQ=255) ggTATTCCATATTTACGCAGCCTCTGCGCGATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGGAACAGGCTgtaggt < 3:318846/149‑6 (MQ=255) ttCCATATTTACGCAGCCTCTGCGCGATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTg < 6:342789/140‑1 (MQ=255) ttCCATATTTACGCAGCCTCTGCGCGATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTg > 5:342789/1‑140 (MQ=255) ccATATTTACGCAGCCTCTGCGCGATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGcc > 4:341826/1‑149 (MQ=255) atatTTACGCAGCCTCTGCGCGATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGAGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGt > 1:139902/1‑149 (MQ=255) gCAGCCTCTGCGCGATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCcg > 3:345438/1‑149 (MQ=255) cAGCCTCTGCGCGATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCcgc < 3:86200/149‑1 (MQ=255) ggctctGCGCGATATCCGTGTGCGAAGGTTGCAAGCGCCCGGCCTTTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCATGCTGGCCACTTCGCCGTCTTGCCCGCGt < 5:204727/147‑1 (MQ=255) gCCTCTGCGCGATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGt < 1:234910/149‑1 (MQ=255) ctGCGCGATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCa > 1:325963/1‑149 (MQ=255) tGCGCGATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGc > 6:315534/1‑122 (MQ=255) tGCGCGATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGc < 5:315534/122‑1 (MQ=255) gcgATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGa < 6:128412/149‑1 (MQ=255) gcgATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGa < 3:341826/149‑1 (MQ=255) tgCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGat < 6:121951/149‑1 (MQ=255) gAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTGCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCTATATc < 5:239507/149‑1 (MQ=255) aGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGGGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCGGTCTTGCCCTCGTGCCACCGAGGTGCCGGCGATATCCa < 8:360187/149‑1 (MQ=255) tGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGG‑CACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCg < 4:375071/134‑1 (MQ=255) tGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGG‑CACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCg > 3:375071/1‑134 (MQ=255) aaGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGcc < 2:10666/149‑1 (MQ=255) aaGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGcc < 5:384185/149‑1 (MQ=255) aGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCtt < 4:234843/108‑1 (MQ=255) aGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCtt > 3:234843/1‑108 (MQ=255) gcCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCTAGGTGCCGGCGATATCCAGGTCGCCGata > 7:62371/1‑149 (MQ=255) gCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCTTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATccac < 5:1314/149‑1 (MQ=255) cGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGcc > 2:159068/1‑149 (MQ=255) gACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCg > 3:166604/1‑147 (MQ=255) ggTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATa < 2:325963/149‑1 (MQ=255) cTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCcgc > 4:361857/1‑149 (MQ=255) tGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCcgcg > 3:78484/1‑149 (MQ=255) gTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCcgcggcgc < 4:345438/149‑1 (MQ=255) ataAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCcgcggcgcg > 4:269825/1‑148 (MQ=255) ataAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCcgcggcgcg > 5:10763/1‑148 (MQ=255) taAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCcgcggcgcgg < 6:10763/148‑1 (MQ=255) taAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCCGCGGCGCGGa < 1:111593/149‑1 (MQ=255) gcTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCCGCGGCGCGGAAGAt > 4:317152/1‑148 (MQ=255) tAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCCGCGGCGCGGAAGATCACGt > 2:378255/1‑149 (MQ=255) tAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCATGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCCGCGGCGCGGAAGATCACGt > 7:181473/1‑149 (MQ=255) aaCAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCt > 8:39896/1‑118 (MQ=255) aaCAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCt < 7:39896/118‑1 (MQ=255) gTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCCGCGGCGCGGAAGATCACGTTCTGc < 1:159068/149‑1 (MQ=255) gTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCATGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCCGCGGCGCGGAAGATCACGTTCTGc < 8:181473/149‑1 (MQ=255) cgcgCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTg < 2:169386/107‑1 (MQ=255) cgcgCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTg > 1:169386/1‑107 (MQ=255) gcgcTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCCGCGGCGCGGAAGATCACGTTCTGCAACt > 2:216327/1‑149 (MQ=255) gcTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCCGCGGCGCGGAAGATCACGTTCTGCAACTgg > 5:257235/1‑149 (MQ=255) gcTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCCGCGGCGCGGAAGATCACGTTCTGCAACTgg > 8:255842/1‑149 (MQ=255) gccAGCCTGGAACAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCCGCGGCGCGGAAGATCACGTTCTGCAACTGGCGCACATTGCCCg > 7:169680/3‑149 (MQ=255) ccAGCCTGGAACAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAg < 6:106817/98‑1 (MQ=255) ccAGCCTGGAACAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAg > 5:106817/2‑99 (MQ=255) cAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCCGCGGCGCGGAAGATCACGTTCTGCAACTGGCGCACATTGCCCGGc > 5:238174/1‑149 (MQ=255) ccTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCCGCGGCGCGGAAGATCACGTTCTGCAACTGGCGCACATTGCCCGGcc > 6:194913/1‑147 (MQ=255) ccTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCCGCGGCGCGGAAGATCACGTTCTGCAACTGGCGCACATTGCCCGGcc > 8:9268/1‑147 (MQ=255) ttCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCCGCGGCGCGGAAGATCACGTTCTGCAACTGGCGCACATTGCCCGGCCAAgg < 7:9268/147‑1 (MQ=255) ttCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCCGCGGCGCGGAAGATCACGTTCTGCAACTGGCGCACATTGCCCGGCCAAgg < 6:257235/147‑1 (MQ=255) | CCCGGGTATTCCATATTTACGCAGCCTCTGCGCGATAGCCGTGTGCGAAGTTTGCAAGCGCCCGGCCAGTTGCCGTGTTGACGGGTAGCTGGCGTATAAGCGCTGTAACAGTTCGCGCTCGAAATCACCTACAGCCTGTTCCAGGCTGGCCACTTCGCCGTCTTGCCCGCGTGCCACCGAGGTGCCGGCGATATCCAGGTCGCCGATATCCACCAGGTTGCCCTCGCAGATAGCCGCGGCGCGGAAGATCACGTTCTGCAACTGGCGCACATTGCCCGGCCAAGG > NC_002947/1135475‑1135759 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |