| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,342,252 | A→T | 8.0% | intergenic (‑36/+19) | PP_1166 ← / ← PP_1167 | DMT superfamily permease/TRAP dicarboxylate transporter subunit DctM |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,342,252 | 0 | A | T | 8.0% | 179.9 / 5.3 | 62 | intergenic (‑36/+19) | PP_1166/PP_1167 | DMT superfamily permease/TRAP dicarboxylate transporter subunit DctM |
| Reads supporting (aligned to +/- strand): ref base A (31/26); new base T (2/3); total (33/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.34e-01 | |||||||||||
CGCGCGGCGATGTGGTTGCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGATACTCACCTTGCC > NC_002947/1342113‑1342396 | cgcgcgGCGATGTGGTTGCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCGGGGGCCGCTTGGCGGccc < 6:219867/148‑1 (MQ=255) gcgcgGCGATGTGGTTGCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGccccc < 5:282677/149‑1 (MQ=255) ggcgATGTGGTTGCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTc < 5:277161/149‑1 (MQ=255) tGCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCTAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGc > 8:284116/1‑149 (MQ=255) gCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTc > 5:72441/1‑137 (MQ=255) gCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTc < 6:72441/137‑1 (MQ=255) gCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGcaccac < 3:197270/149‑1 (MQ=255) tGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAg > 2:105015/1‑149 (MQ=255) gCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCAACGCAGCca > 5:367704/1‑149 (MQ=255) cAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCcaca > 6:329007/1‑149 (MQ=255) cGAGCAGGGCGATGTCTAGTTTGAGTGGGTAAAGCGGTACAGCCGAGTAGGTAACAGGCATGTGCATGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTGATAATTACAGCACCACGCTAGGCAGCGACAGCGAGATc < 6:367704/149‑1 (MQ=255) cGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGc > 4:202030/1‑143 (MQ=255) ggCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGaa > 3:95168/1‑149 (MQ=255) cGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATg < 7:284116/149‑1 (MQ=255) gATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGTGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGt < 4:226148/149‑1 (MQ=255) ggCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAg > 7:194127/1‑149 (MQ=255) gTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACt > 4:290747/1‑149 (MQ=255) gTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGGCAAGCGTCCCCCGGTAATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATc < 7:46012/149‑1 (MQ=255) tGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACt < 7:319850/142‑1 (MQ=255) tGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACt > 8:319850/1‑142 (MQ=255) tGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCAt > 1:318470/1‑147 (MQ=255) aaGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCa < 4:95168/149‑1 (MQ=255) aGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAg < 8:114846/149‑1 (MQ=255) aGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAgcg > 7:212244/1‑149 (MQ=255) ccGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAgcgc > 7:23937/1‑148 (MQ=255) cGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCa < 7:84505/149‑1 (MQ=255) aggaggGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGACAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAgg < 3:290747/149‑1 (MQ=255) ggaggGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGt < 1:105015/149‑1 (MQ=255) ggAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGaa > 8:214121/1‑149 (MQ=255) gAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCGTCAGCACCAGGAACAGCGCCAGGTAGAAc < 1:8262/149‑1 (MQ=255) aGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACt < 4:105393/112‑1 (MQ=255) aGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACt > 3:105393/1‑112 (MQ=255) ccATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATc < 8:194127/149‑1 (MQ=255) gtgCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAAc > 7:183038/1‑139 (MQ=255) gtgCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAAc < 8:183038/139‑1 (MQ=255) gCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAgcgc < 2:318470/148‑1 (MQ=255) gATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCAGAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACAAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCa > 2:331138/1‑149 (MQ=255) tCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGAAAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCAcc > 1:107852/1‑149 (MQ=255) ccATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCg > 6:37265/1‑149 (MQ=255) ccATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCg > 3:259769/1‑149 (MQ=255) aTTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCgg < 4:71598/37‑1 (MQ=255) aTTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCgg > 3:71598/1‑37 (MQ=255) aTTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACATCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTc < 4:259769/149‑1 (MQ=255) aTTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAgc < 1:267482/116‑1 (MQ=255) aTTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAgc > 2:267482/1‑116 (MQ=255) aTTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTc > 1:151431/1‑149 (MQ=255) aTTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTc > 1:156589/1‑149 (MQ=255) tttGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTc > 2:34709/1‑148 (MQ=255) agCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGATa < 8:212244/149‑1 (MQ=255) gCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGATAc > 7:96519/1‑149 (MQ=255) cccAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGATACt > 1:195160/1‑149 (MQ=255) ccAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCAcc > 6:228063/1‑134 (MQ=255) ccAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCACCTTCACCGTCGACTCGATACTc > 2:249045/1‑149 (MQ=255) cgggggCCGCTTGGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCt < 5:48740/65‑1 (MQ=38) cgggggCCGCTTGGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCt > 6:48740/3‑67 (MQ=38) gggggCCGCTTGGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGa > 5:299444/2‑142 (MQ=255) gggggCCGCTTGGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGa < 6:299444/141‑1 (MQ=255) ggCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGATACTCACCtt < 2:156589/149‑1 (MQ=255) gccgccAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGATACTCACCTTg < 3:202030/149‑1 (MQ=255) gccAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGATa > 8:160495/1‑137 (MQ=255) gccAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGATa < 7:160495/137‑1 (MQ=255) gccAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGATACTCACCTTGcc > 6:132941/1‑148 (MQ=255) | CGCGCGGCGATGTGGTTGCCAGCGAATGAACAGGCCAGGAGGGCGAGCAGGGCGATGGCTAGTTTGCGTGGGAAAAGCGGTACAGCCGAGGAGGGAACAGCCATGTGCAGGATCCATTTGCAAGAGCCCAGGGGCCGCCAAGCGGCCCCCGGTCATAATTACAGCACCACGCTAGGCAGCCACAGCGAGATCGCTGGAATGTAAGTCACTGCCATCAGCACCAGGAACAGCGCCAGGTAGAACGGCATCAGCGCCTTCACCGTCGACTCGATACTCACCTTGCC > NC_002947/1342113‑1342396 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |