| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,412,010 | C→T | 6.9% | intergenic (‑76/‑47) | PP_1232 ← / → tusA‑I | hypothetical protein/sulfurtransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,412,010 | 0 | C | T | 6.9% | 167.6 / 2.2 | 58 | intergenic (‑76/‑47) | PP_1232/tusA‑I | hypothetical protein/sulfurtransferase |
| Reads supporting (aligned to +/- strand): ref base C (25/29); new base T (2/2); total (27/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.90e-01 | |||||||||||
TCAGCATGGCCGGGAAGGGCCATCAGGCAGGCCAGCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCACTGCTCAAGGCCAAGATGGAGCTCAATCGCCTGGCCAGT > NC_002947/1411870‑1412158 | tcAGCATGGCCGGGAAGGGCCATCAGGCAGGCCAGCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTagc > 8:94047/1‑141 (MQ=255)tcAGCATGGCCGGGAAGGGCCATCAGGCAGGCCAGCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTagc < 7:94047/141‑1 (MQ=255)tcAGCATGGCCGGGAAGGGCCATCAGGCAGGCCAGCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATg > 8:322138/1‑149 (MQ=255) aGCATGGCCGGGAAGGGCCATCAGGCAGGCCAGCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGc > 4:130963/1‑148 (MQ=255) aGGGCCATCAGGCAGGCCAGCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTg < 7:98591/149‑1 (MQ=255) ggCCATCAGGCAGGCCAGCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGc > 1:64312/1‑149 (MQ=255) ggCCATCAGGCAGGCCAGCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGc < 2:64312/149‑1 (MQ=255) cATCAGGCAGGCCAGCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGAt < 3:130963/149‑1 (MQ=255) gcaggcCAGCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCttt < 5:345870/149‑1 (MQ=255) gcaggcCAGCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCttt > 7:80118/1‑149 (MQ=255) caggcCAGCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTg < 5:864/149‑1 (MQ=255) ggcCAGCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGga < 3:214357/149‑1 (MQ=255) ccAGCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGgaga > 6:294369/1‑149 (MQ=255) ccAGCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGgaga > 7:198654/1‑149 (MQ=255) cAGCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGAc < 2:218386/149‑1 (MQ=255) gCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAACATTCCTACTGTAGCGGGCTGACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGAccc > 7:339710/1‑149 (MQ=255) tCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCcgc > 3:141191/1‑149 (MQ=255) gcagGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGAt < 8:80118/149‑1 (MQ=255) gggTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAg < 7:322138/149‑1 (MQ=255) gggTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGAGCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAg < 8:303760/149‑1 (MQ=255) gTAGATTCATGCATGAAGCTCGAGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGAc > 7:55749/1‑149 (MQ=255) tAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTgg > 2:205672/1‑121 (MQ=255) tAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTgg < 1:205672/121‑1 (MQ=255) tgAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGaa < 7:306951/149‑1 (MQ=255) gcgTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCttt > 4:253859/1‑99 (MQ=255) gcgTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCttt < 3:253859/99‑1 (MQ=255) gcgTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGAcc < 7:184976/129‑1 (MQ=255) gcgTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGAcc > 8:184976/1‑129 (MQ=255) gcgTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGAc < 6:272529/147‑1 (MQ=255) gTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCa < 8:132465/149‑1 (MQ=255) gATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCgg > 7:298393/1‑149 (MQ=255) tCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGc > 4:274040/1‑149 (MQ=255) aaGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTg > 7:129727/1‑148 (MQ=255) tACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTg > 5:10433/1‑140 (MQ=255) tACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTg < 6:10433/140‑1 (MQ=255) cTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCttt < 8:129727/149‑1 (MQ=255) tGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTg > 2:171880/1‑149 (MQ=255) tAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGTCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGcc < 5:260247/142‑1 (MQ=255) tAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGTCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGcc > 6:260247/1‑142 (MQ=255) gCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCa < 5:182492/148‑1 (MQ=255) tCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCACTGCTc > 3:174313/1‑148 (MQ=255) acacGTTGACGACCAGTGGCGCTATCCTAGTCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGa < 3:227963/112‑1 (MQ=255) acacGTTGACGACCAGTGGCGCTATCCTAGTCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGa > 4:227963/1‑112 (MQ=255) acacGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGcc < 5:204365/132‑1 (MQ=255) acacGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCACTGCTCAAg > 5:228695/1‑149 (MQ=255) cGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCACTGCTCAAGGcc < 4:141191/149‑1 (MQ=255) acgacCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCACTGCTCAAGGCCAAGAt < 8:55749/149‑1 (MQ=255) gacCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCACTGCTCAAGGCCAAGATg > 5:116192/1‑148 (MQ=255) gacCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCACTGCTCAAGGCCAAGATg > 1:211531/1‑148 (MQ=255) gacCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCACTGCTCAAGGCCAAGATg > 4:355776/1‑148 (MQ=255) ccAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCACTGCTCAAGGc > 3:17707/1‑139 (MQ=255) ccAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCACTGCTCAAGGc < 4:17707/139‑1 (MQ=255) aGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCACTGCTCAAGGCCAAGATGGAGCt < 8:339710/149‑1 (MQ=255) gTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGt > 2:283024/1‑68 (MQ=255) gTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGt < 1:283024/68‑1 (MQ=255) cgcTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCACTGCTCAAGGCCAAGATGGAGCTCAATc < 4:174313/149‑1 (MQ=255) gcTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACCCCCTGACCTGCGACCCCGAACTGGACGCCAGCGGGCTGAATTGACCTTTGCCACTGCTCAACGCCAAGATGGAGCTCAATCg > 1:194164/1‑149 (MQ=255) cTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGAGGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCACTGCTCAAGGCCAAGATGGAGCTCAATCGc < 8:198654/149‑1 (MQ=255) tCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCACTGCTCAAGGCCAAGATGGAGCTCAATCGcc < 3:355776/147‑1 (MQ=255) tCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCACTGCTCAAGGCCAAGATGGAGCTCAATCGcc < 1:171880/147‑1 (MQ=255) ccagccaTGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCACTGCTCAAGGCCAAGATGGAGCTCAATCGCCTGGCCAGt > 2:8618/1‑149 (MQ=255) | TCAGCATGGCCGGGAAGGGCCATCAGGCAGGCCAGCGTCAGCAGGGTAGGGCGCAGTAGATTCATGCATGAAGCTCGCGTCGGATCAAAGATACCTACTGTAGCGGGCTCACACGTTGACGACCAGTGGCGCTATCCTAGCCAGCCATGCCAAGAAGCAGCCTGGCGATGCCTTTGGAGACCCCGCGATGAGTAACACCCTGACCTGCGACGCCGAACTGGACGCCAGCGGGCTGAATTGCCCTTTGCCACTGCTCAAGGCCAAGATGGAGCTCAATCGCCTGGCCAGT > NC_002947/1411870‑1412158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |