| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,644,836 | G→T | 9.1% | intergenic (‑95/+109) | lon‑I ← / ← gcd | DNA‑binding ATP‑dependent protease/quinoprotein glucose dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,644,836 | 0 | G | T | 9.1% | 143.5 / 4.7 | 52 | intergenic (‑95/+109) | lon‑I/gcd | DNA‑binding ATP‑dependent protease/quinoprotein glucose dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base G (30/17); new base T (2/3); total (32/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.77e-01 | |||||||||||
TTCGACTTCGCTGTGTTCGTCAGGGTGTTCGGGGAAATCCTGCTGGTCGCTCATGGGGCACCTGCGTGAATGACTATGGTGCTTAGATGGGGCGGGGAGGGATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTAATTTGTAAGCAATGATGTAATCGCCCA > NC_002947/1644688‑1644982 | tgccaCTTCGCGGTGTTGTGCCGGGTGTGCGGGTAAAGCCTGGGGTGCGCCCAGGGGGCACCTGCGTGAATTACTTTGGTGCTTCTATGGGGCGGGGAGGGATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTgcg < 4:275068/145‑1 (MQ=255) tCGACTTCGCTGTGTTCGTCAGGGTGTTCGGGGAAATCCTGCTGGTCGCTCATGGGGCACCTGCGTGAATGACTATGGTGCTTAGATGGGGCGGGGAGGGATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTgcg > 4:206236/1‑148 (MQ=255) ttCGCTGTGTTCGTCAGGGTGTTCGGGGAAATCCTGCTGGTCGCTCATGGGGCACCTGCGTGAATGACTATGGTGCTTAGATGGGGCGGGGAGGGATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGcagcag > 3:273295/1‑149 (MQ=255) gtgcggcAGGGGTTTCGGGGAACACGTGCTGGGCCCTCATGGGCCACCTGGGGTAATGACTAGGGGGGTTCGTTGGGGCGGGCAGGGAGGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGaa < 3:131869/143‑1 (MQ=19) gttttggggtAATTCCTGCTGTTCGGTCATGGGGAACTTGCGTTAATTAATTTGGGTGTTTGATGGGGGGGGTTGGTTTGGTTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGc < 4:273295/143‑1 (MQ=19) ggggAAATCCTGCTGGTCGCTCATGGGGCACCTGCGTGAATGACTATGGTGCTTAGATGGGGCGGGGAGGGATGGGTTTCAATGGTTCGCGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTc > 5:176788/1‑147 (MQ=255) ggAAATCCTGCTGGTCGCTCATGGGGCACCTGCGTGAATGACTATGGTGCTTAGATGGGGCGGGGAGGGATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTc > 8:196883/1‑145 (MQ=255) aaaTCCTGCTGGTCGCTCATGGGGCACCTGCGTGAATGACTATGGTGCTTAGATGGGGCGGGGAGGGATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTc > 7:193050/1‑143 (MQ=255) accccTGCGGGTCGCGCATGGGGCACCTGCGTGAATGACTAGTGTGGTTTTATGGGGCGGGGAGGTATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATc < 5:103971/145‑1 (MQ=38) cgtcgtgGTCCCTCTTGGGGCACCGGGGTGAAGGCATTTGTGGCTTCTAGGGGGGGGGGTTGGTGGGGTTTCAATGGTTCGGTAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAg < 6:35965/137‑1 (MQ=19) ccTGCTGGTCGCTCATGGGGCACCTGCGTGAATGACTATGGTGCTTAGATGGGGCGGGGAGGGATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAg > 5:35965/1‑142 (MQ=255) gCACCTGCGTGAATGACTATGGTGCTTAGATGGGGCGGGGAGGGATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTTGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGa > 5:269393/1‑148 (MQ=255) tgTGAATTACTTTGGTGGTTCGTTGGGCGGGGGAGGGTTGGGTTTCAATGGTGCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGa < 8:193050/147‑1 (MQ=38) aTGACTATGGTGCTTAGATGGGGCGGGGAGGGATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAg > 1:159897/1‑149 (MQ=255) tGACTATGGTGCTTAGATGGGGCGGGGAGGGATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAgg > 8:103728/1‑149 (MQ=255) gACTATGGTGCTTAGATGGGGCGGGGAGGGATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGc > 7:176454/1‑149 (MQ=255) tATGGTGCTTAGATGGGGCGGGGAGGGATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCg > 1:175360/1‑148 (MQ=255) tATGGTGCTTAGATGGGGCGGGGAGGGATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCg > 8:213024/1‑148 (MQ=255) ggTGCTTAGATGGGGCGGGGAGGGATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCTGCGCAGcccaa > 5:342500/1‑81 (MQ=38) ggTGCTTAGATGGGGCGGGGAGGGATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCTGCGCAGcccaa < 6:342500/83‑3 (MQ=38) ttAGATGGGGCGGGGAGGGATGGGTTACAATGGTTCGGTATCAGCCTTGTGTCGCGATTGGGCTGAGAAGCAGCCCCAGAATCCATACAGCATTCTAGATCGTTTGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAg > 1:6139/1‑149 (MQ=255) gggCGGGGAGGGATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAg > 8:127661/1‑149 (MQ=255) gggagggaTGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGc > 8:169475/1‑149 (MQ=255) gggTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGgt < 7:213024/149‑1 (MQ=255) tttCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGGATTCTAGATCGTTGGGGCCGCTGCGCGACTGAAACGCGACACAAGCCCGCTCCCGCAGGGGTGAGCCTGCGGGAGCGGTGTc > 8:33285/1‑149 (MQ=39) tttCAATGGTTCGGGAGCAGCCTTGTGTCGCGAGTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTc < 3:206236/149‑1 (MQ=255) ttCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCg > 8:134469/1‑149 (MQ=255) tCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGc > 6:95814/1‑149 (MQ=255) tCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGc > 3:55176/1‑149 (MQ=255) aaTGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAgg > 8:358123/1‑122 (MQ=255) aaTGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAgg < 7:358123/122‑1 (MQ=255) aTGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCttt < 7:103728/149‑2 (MQ=255) aTGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCtt > 8:344199/1‑148 (MQ=255) ggTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCAGTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGGCACAAGGCCGCTCCGTCAGGGTTGAGCCTGCGGGAGCGGGGTCGcggacg > 8:180453/1‑144 (MQ=39) gggAGCAGCCTTGTGTCGCGATTTGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGc < 6:269393/148‑1 (MQ=255) ggAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCt > 7:225950/1‑148 (MQ=255) gAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTaa > 5:35953/1‑149 (MQ=255) gcagcCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTAAtt > 1:55295/1‑149 (MQ=255) cagcCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTAAttt < 7:134469/149‑1 (MQ=255) ccTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGCCCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCCCTTACACGGCTAATTTGt > 5:279148/1‑148 (MQ=255) ccTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTAATTTGt > 6:301746/1‑148 (MQ=255) cTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTAATTTGTaa < 8:225950/149‑1 (MQ=255) gtgtCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCAGCGGGAGCGGTGTCGCTTACTCGGCTAATATGTAAGc > 8:159321/1‑148 (MQ=255) cgcgATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTAATTTGTAAGCAatg > 8:174551/1‑148 (MQ=255) cgcgATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTAATTTGTAAGCAatg < 7:174551/148‑1 (MQ=255) gcgATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTAATTTGTAAGCAatga < 7:127661/148‑1 (MQ=255) attctggggCTGCTGCGCAGCCCCAGAATCCATCCAGCATTCTTGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTAATTTGTAAGCAatgat < 5:316682/143‑1 (MQ=255) cgATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTAATTTGTAAGCAatgatg < 8:176454/149‑1 (MQ=255) cgATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTAATTTGTAAGCAatgatg < 7:344199/149‑1 (MQ=255) tggggCTGCTGCGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGa > 4:125139/3‑108 (MQ=39) tggggCTGCTGCGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGa < 3:125139/106‑1 (MQ=39) tGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTAATTTGTAAGCAATGATGTAAt > 8:337728/1‑149 (MQ=255) ggCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTAATTTGTAAGCAATGATGTAATc < 4:55176/148‑1 (MQ=255) gCTGCGCAGCAGCCCCAGAATCCATCCAACATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTAATTTGTAAGCAATGATGTAATCGc > 1:216608/1‑149 (MQ=255) cgcAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTAATTTGTAAGCAATGATGTAATCGccc < 5:95814/147‑1 (MQ=255) cgcAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTAATTTGTAAGCAATGATGTAATCGCCCa < 7:196883/148‑1 (MQ=255) | TTCGACTTCGCTGTGTTCGTCAGGGTGTTCGGGGAAATCCTGCTGGTCGCTCATGGGGCACCTGCGTGAATGACTATGGTGCTTAGATGGGGCGGGGAGGGATGGGTTTCAATGGTTCGGGAGCAGCCTTGTGTCGCGATTGGGCTGCGCAGCAGCCCCAGAATCCATCCAGCATTCTAGATCGTTGGGGCCGCTGCGCGACCGAAACGCGACACAAGGCCGCTCCCTCAGGGTTGAGCCTGCGGGAGCGGTGTCGCTTACTCGGCTAATTTGTAAGCAATGATGTAATCGCCCA > NC_002947/1644688‑1644982 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |