| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,707,230 | G→C | 5.3% | intergenic (+48/+94) | PP_1501 → / ← PP_1502 | hypothetical protein/OmpA family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,707,230 | 0 | G | C | 5.3% | 307.8 / 5.5 | 94 | intergenic (+48/+94) | PP_1501/PP_1502 | hypothetical protein/OmpA family protein |
| Reads supporting (aligned to +/- strand): ref base G (40/49); new base C (3/2); total (43/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.14e-01 | |||||||||||
GTTCGACACCCAGCAGAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTT > NC_002947/1707083‑1707374 | gTTCGACACCCAGCAGAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCgcggg > 5:16759/1‑149 (MQ=255) ttCGACACCCAGCAGAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCCGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCgcgggc > 5:166582/1‑149 (MQ=255) cGACACCCAGCAGAAAGGCCTGACCGGCGTGCTGGTGGACAACGCGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCgcgggcg > 1:73630/1‑149 (MQ=255) cGACACCCAGCAGAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCgcgggcgg > 2:295237/1‑149 (MQ=255) acacCCAGCAGAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGgcggcg < 8:325980/149‑1 (MQ=255) acCCAGCAGAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGgcgcg > 7:276490/1‑148 (MQ=255) acCCAGCAGAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCt > 2:50997/1‑149 (MQ=255) cccAGCAGAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCTGTGAGATCGAG‑CGCCGCCCGCGCGGCGCTc < 4:368521/149‑1 (MQ=255) cccAGCAGAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTc < 7:150496/149‑1 (MQ=255) cccAGCAGAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTc < 4:38539/149‑1 (MQ=255) ccAGCAGAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTc > 8:109664/1‑148 (MQ=255) ccAGCAGAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTc > 4:317726/1‑148 (MQ=255) ccAGCAGAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCg < 6:166582/149‑1 (MQ=255) ccAGCAGAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCA‑TTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGa > 4:262073/1‑149 (MQ=255) cagcagAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGa < 8:78169/149‑1 (MQ=255) cagcagAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGa < 7:109664/149‑1 (MQ=255) cagcagAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGa > 1:156644/1‑149 (MQ=255) agcagAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGa < 5:153334/148‑1 (MQ=255) agcagAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGa > 6:153334/1‑148 (MQ=255) agcagAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGa > 6:17818/1‑148 (MQ=255) gcagAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGAtc > 2:180761/1‑149 (MQ=255) cagAAAGGCCTGACCGGCGTGCTGGTGGTCAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCGGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGAtct < 6:5557/149‑1 (MQ=255) cagAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGAtct > 3:20173/1‑149 (MQ=255) cagAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGAtct > 1:255723/1‑149 (MQ=255) gAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTca > 7:127425/1‑149 (MQ=255) aaaGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTc > 2:251236/1‑141 (MQ=255) aaaGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTc < 1:251236/141‑1 (MQ=255) aaaGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTca > 4:198407/1‑148 (MQ=255) aGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑Ag < 6:16759/149‑1 (MQ=255) ccTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑Aggcg > 6:310109/1‑149 (MQ=255) cGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCacaa < 2:73630/149‑1 (MQ=255) gCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCacaaca > 5:217740/1‑149 (MQ=255) cTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCTGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTAt < 8:127425/148‑1 (MQ=255) cTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTAt < 1:295237/148‑1 (MQ=255) cTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATc < 5:310109/149‑1 (MQ=255) tggACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCg < 8:276490/149‑1 (MQ=255) cAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAAc > 1:8688/1‑148 (MQ=255) aaC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATc > 3:69140/1‑140 (MQ=255) aaC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATc < 4:69140/140‑1 (MQ=255) aC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACaaa < 3:198407/149‑1 (MQ=255) c‑cGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGgcggcg > 5:299812/1‑109 (MQ=255) c‑cGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGgcggcg < 6:299812/109‑1 (MQ=255) c‑cGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACa > 7:305560/1‑146 (MQ=255) c‑cGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAg < 7:49514/149‑1 (MQ=255) gCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCTCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGaa < 5:17818/149‑1 (MQ=255) aaGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGaaaa < 1:180761/149‑1 (MQ=255) aGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAg < 2:8688/149‑1 (MQ=255) agcgcgGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGcc > 5:70112/2‑149 (MQ=255) gcgcgGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGccc > 4:85445/1‑149 (MQ=255) ggTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCcgcg > 6:212903/1‑149 (MQ=255) gTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGt < 2:266012/149‑1 (MQ=255) tGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATcg > 7:254820/1‑149 (MQ=255) cATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATcgcg < 6:206732/149‑1 (MQ=255) ggCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCgg‑gg < 5:222284/148‑1 (MQ=255) gAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTg < 6:217740/149‑1 (MQ=255) aGGAAACACCGCGGCAGCTGCAGGGAGGGTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCCGGCGGCGCGCGATCTCAC‑AGGCGGCACAACATTATCCGCCACCAAAGAAAAGCCCCCCGTCG‑ATCGCGG‑GGCTTGt < 6:70112/149‑1 (MQ=255) ggAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCacaa > 4:108102/1‑101 (MQ=255) ggAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCacaa < 3:108102/101‑1 (MQ=255) cacCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTTG‑ATCGCGG‑GGCTTGTCCTTTc < 3:317726/149‑1 (MQ=255) cacCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTc < 3:108276/149‑1 (MQ=255) cacCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTc < 5:212903/149‑1 (MQ=255) cacCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCA‑TTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCa < 3:262073/149‑1 (MQ=255) acCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCttt > 7:6641/1‑147 (MQ=255) acCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CCCCGCGCGGGCGGCGCGCGATATGAC‑AGGGGGGCCCACAATTTGGGGGAACAAAGAAAAAACCCGCGTCG‑ATAGGGG‑GGGGTGTCCgtt > 6:50013/1‑147 (MQ=255) cgGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGAGGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGc > 1:99119/1‑148 (MQ=255) gTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTagccagc < 5:50013/149‑1 (MQ=255) gTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAg > 6:276155/1‑149 (MQ=255) tGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAgc < 5:276155/149‑1 (MQ=255) gTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCgg > 6:287722/1‑115 (MQ=255) gTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCgg < 5:287722/115‑1 (MQ=255) tttCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGGAGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTg < 1:50997/149‑1 (MQ=255) ttCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGaa > 7:350185/1‑149 (MQ=255) gcgcAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCACGGGGCGGCACACCATTTGCGGCGAACAAAGAAAAGCCCCGCGGCG‑AACCCGG‑GGGTTGTCCTTACAGATAGCCAGCGTTAGCGCTGACCCt > 1:299032/1‑149 (MQ=37) gcgcAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTg > 4:71204/1‑149 (MQ=255) cgcAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑Aggcgg < 8:195483/63‑1 (MQ=255) gcagcaTTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCCCGTCG‑ATAGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTgg > 4:196420/1‑148 (MQ=255) cagcaTTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTgg < 3:305771/147‑1 (MQ=255) cagcaTTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTgg > 4:305771/1‑147 (MQ=255) gcaTTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCa < 8:254820/149‑1 (MQ=255) aTTTTTGGCGCCCGCGTCATCGTT‑CGCCGCGGGGGCGGCGGTGGATCTAAC‑AGGCGGCACAACATTATGGGCGAACAAAGAAAACCCCCGCGTCGTATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCAc < 1:94683/149‑1 (MQ=255) gccgcCTGTGAGATCGAG‑CGCCGCCCGCGCGGCGCTCGATCTCGC‑GGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCgt > 8:360872/3‑149 (MQ=37) gcgcCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCgtg < 2:99119/149‑1 (MQ=255) gcgcCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCgt < 2:156644/148‑1 (MQ=255) ccgcCTGTGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCgtg > 6:157257/2‑149 (MQ=255) cgAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCAc < 4:101226/134‑1 (MQ=255) cgAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCAc > 3:101226/1‑134 (MQ=255) gagaTCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGc < 7:129615/138‑1 (MQ=255) gagaTCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGc > 8:129615/1‑138 (MQ=255) gaTCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCgg < 8:350185/149‑1 (MQ=255) aTCGAG‑CGCCGCCCGCGCGGCGCTCGATCTCGC‑GGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAg > 1:152307/1‑99 (MQ=37) aTCGAG‑CGCCGCCCGCGCGGCGCTCGATCTCGC‑GGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAg < 2:152307/99‑1 (MQ=37) caG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTgg < 3:274837/148‑1 (MQ=255) g‑cgcCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGtt > 5:300938/1‑149 (MQ=255) cgcgcgGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCg > 4:327629/1‑149 (MQ=255) cgcccgCGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCg > 6:101229/1‑149 (MQ=255) cgcgGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGtt < 3:85445/149‑1 (MQ=255) cgcgGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGtt < 8:6641/149‑1 (MQ=255) cgcgGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGtt < 3:196420/149‑1 (MQ=255) | GTTCGACACCCAGCAGAAAGGCCTGACCGGCGTGCTGGTGGACAAC‑CGCAAGCGCGCGGTGCGCTGCATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAG‑CGCCGCGCGGGCGGCGCTCGATCTCAC‑AGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGTCG‑ATCGCGG‑GGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTT > NC_002947/1707083‑1707374 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |