| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 196,306 | T→C | 16.9% | N604N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,306 | 0 | T | C | 16.9% | 264.6 / 43.2 | 125 | N604N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (52/51); new base C (8/13); total (61/64) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 125 total aligned reads displayed.
GGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATC > NC_002947/196160‑196447 | ggCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATcc > 5:12692/1‑149 (MQ=39) cGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTg > 5:227075/1‑149 (MQ=39) aTTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAg > 4:248927/1‑149 (MQ=39) cGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGc > 4:158210/1‑149 (MQ=39) gAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGcc > 4:120217/1‑149 (MQ=39) accccgaccccgCCGCCGCCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACa < 2:177739/147‑1 (MQ=255) accccgaccccgACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCC‑CCGAAGGCGGCGTGATCACTTACCCCGTGACCCGGCGAAATCCTGCCCAGACGCCGGTGACAGt > 5:148557/1‑149 (MQ=14) aCCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg > 5:335400/1‑141 (MQ=34) cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa > 6:319207/1‑149 (MQ=39) cctaaCCCGACGCCGGCTCAGACCACGATCAACGTCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCT‑CCGAAGGCGTCGTGATGACTTACTCCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc < 2:249908/146‑1 (MQ=14) ccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc > 3:18568/1‑149 (MQ=39) ccGAACCCGACGCCGGCCCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc > 8:237859/1‑149 (MQ=255) cGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc < 6:12692/149‑1 (MQ=39) cccGACGCGGGCTCTGACCACGATCAACGACTCGGTCGACACCACTTCCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGGGTGATCACTTACTCCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGt < 2:124398/149‑1 (MQ=14) ccGACTCCGCCTCAGACCAAGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACTGAGAGCACGACGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAACCTGACCAGACGACCGTGACAGTGAACCTGTc > 6:223787/1‑149 (MQ=11) cGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCCGCCGCCGGTGACAGTGCCCCTGTc > 6:291340/1‑148 (MQ=255) cGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTc > 3:52749/1‑148 (MQ=39) gACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTcc > 4:202619/1‑148 (MQ=39) gCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACg < 3:202619/149‑1 (MQ=39) gCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACg < 5:319207/149‑1 (MQ=39) cGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc > 4:21620/1‑137 (MQ=40) tCAGACAACGAACAACGACTCGGTCGAAACCACTACCGCGACCCTGACGCCGAGCCCGACGGTCA‑CCTAAGTCGGCGTCATAACTTACACCGTGACCCTGAGCAATCCTGCCCCTCCGCCGGTGACAGTGACCCTGTCCAAACGCCaac > 7:354161/1‑148 (MQ=11) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACa < 4:114718/121‑1 (MQ=39) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACa > 3:114718/1‑121 (MQ=39) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa > 5:182388/1‑149 (MQ=39) gaacAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt < 2:355904/111‑1 (MQ=25) gaacAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt > 1:355904/4‑114 (MQ=25) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCt > 5:31209/1‑100 (MQ=37) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCt < 6:31209/100‑1 (MQ=37) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGt < 3:82933/120‑1 (MQ=255) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGt > 4:82933/1‑120 (MQ=255) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc < 8:187349/147‑1 (MQ=39) aaCGCCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTg > 6:17938/1‑148 (MQ=255) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCa < 6:390114/100‑1 (MQ=37) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa > 8:296584/1‑141 (MQ=39) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa < 7:296584/141‑1 (MQ=39) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 3:248927/149‑1 (MQ=39) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTCACCCTGAGCAATCCTGCCCa > 5:390114/1‑100 (MQ=37) cGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAg < 2:34381/149‑1 (MQ=39) taCTCGGTCGAAACCCCTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt < 2:279084/136‑1 (MQ=255) gACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAGCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAACCCAt > 1:279084/1‑138 (MQ=255) tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgc > 4:87736/1‑148 (MQ=39) cGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg > 6:169809/1‑148 (MQ=39) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 7:5249/147‑1 (MQ=39) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 3:168416/147‑1 (MQ=39) gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGc > 2:246744/1‑147 (MQ=39) gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaa < 6:182388/149‑1 (MQ=39) tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGc > 6:221779/1‑146 (MQ=39) gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAc > 7:127315/1‑149 (MQ=40) gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAc > 1:180097/1‑149 (MQ=40) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGccc > 8:179755/1‑83 (MQ=38) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAATGGCCAAACCATTACCGTTGAAGCCGGCAAACCCCAgg > 3:282377/1‑149 (MQ=255) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg < 1:246744/149‑1 (MQ=17) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg > 1:37788/1‑149 (MQ=17) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg > 6:14276/1‑149 (MQ=17) accaCCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAggg < 6:10772/146‑1 (MQ=0) acTAACGCTACCCTGAAGGCGAGGGCGTCGGTCA‑CAGTAGGCTGCGTGATGACTTTCACCGTTACCCTGAGCAATCCTGCCCAGACGCCGTTGACAGTGACCCTGTCCAACGGGGAAACCATTACCGTTGAAGCCGGCAAGACCCAggg < 4:319973/149‑1 (MQ=11) tACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg > 5:245235/1‑147 (MQ=11) cgACCCTGACGGCGAGCCCGTCGGTCA‑CCGAGGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc < 7:91679/149‑1 (MQ=255) cgACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc < 4:18568/149‑1 (MQ=34) aggcTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACAGCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCGTACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTGGa < 1:180893/146‑1 (MQ=11) cccTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAt > 6:165595/1‑149 (MQ=34) tGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc > 5:169706/1‑149 (MQ=34) tGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTc > 5:233400/1‑149 (MQ=255) aCGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 2:64693/148‑1 (MQ=34) aCGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc < 2:180097/147‑1 (MQ=34) aCGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 6:169706/149‑1 (MQ=34) aCGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 3:158210/149‑1 (MQ=34) aCGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa < 3:5096/149‑1 (MQ=255) cccGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCgg < 8:239170/149‑1 (MQ=255) cGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCa > 2:352777/1‑126 (MQ=35) gTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGAGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGa < 6:36153/149‑1 (MQ=11) tCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGaa < 3:120217/149‑1 (MQ=34) ggTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt < 1:54372/148‑1 (MQ=34) ggTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAt < 8:28193/148‑1 (MQ=255) tCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAccc < 4:120775/114‑1 (MQ=35) tCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAccc > 3:120775/1‑114 (MQ=35) tCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc < 6:233400/149‑1 (MQ=255) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa > 1:332021/1‑65 (MQ=35) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa < 2:332021/65‑1 (MQ=35) ggcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCACACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGCCTTCCAGCCCCCGGCGAATGACGTCTCcaccaa > 1:326290/1‑149 (MQ=11) aCTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 3:297448/148‑1 (MQ=255) tACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 4:256865/1‑142 (MQ=32) tACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 3:256865/142‑1 (MQ=32) acacCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 6:207268/1‑148 (MQ=34) cacCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 3:2826/1‑147 (MQ=34) acCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTGCACGCCGCCAAACCCCAGGCCACGGTCGTTTACAGGACCCCGCGCAATGACGGAAACAAAAAGGGTTCGAGTgacgt > 8:50504/1‑145 (MQ=2) ccGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgc < 2:224287/149‑2 (MQ=255) ctatctccTGAGCAATCCTGCCGTGACGCCGGTGACAGTGACCCTGTCCAACTGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgtg < 3:320202/143‑1 (MQ=11) cGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCttc < 2:172596/127‑3 (MQ=17) cGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCttc > 1:172596/1‑125 (MQ=17) cGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACTGTTCGACTGTCAgcg > 7:174838/1‑147 (MQ=11) cGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgcg > 1:368906/1‑147 (MQ=255) gACCTTGATCAATCCTGCCGAGTCGCCGGTGACAGTGACCCTTTCCAACTGCCAAACTATTTCCGTTGAAGCCTGCAAAACCCATTGCAGCGTCGATTTCCAGAGCCGGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa < 8:354161/149‑1 (MQ=11) aCCCTGAGCAACGCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGACAAACTATTACCGTTGAAGCCGGCAAAACCCCGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCa < 1:175263/148‑1 (MQ=11) aCCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTac < 6:205354/123‑1 (MQ=255) aCCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTac > 5:205354/1‑123 (MQ=255) ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa < 5:207268/149‑1 (MQ=37) cTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGAGCAGCGTCGATTTCCACACACCGGCGAATGACGTCTACAACAACGGTTCGACAGTAAgtgtatatc > 4:320202/1‑143 (MQ=11) gCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATc > 5:258275/1‑146 (MQ=37) | GGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATC > NC_002947/196160‑196447 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |