| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,840,007 | T→C | 6.6% | L135S (TTG→TCG) | PP_1646 → | thioredoxin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,840,007 | 0 | T | C | 6.6% | 174.1 / 2.3 | 60 | L135S (TTG→TCG) | PP_1646 | thioredoxin |
| Reads supporting (aligned to +/- strand): ref base T (29/27); new base C (2/2); total (31/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.88e-01 | |||||||||||
GCAGGACCTGAAGCAGGCTGCCGAAACCCTGGGTATCGGTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCAATCCTCAGCCTTCCTCGGGCCAGAAGCGCAGCGGCTTGCCTTCGGCTGGC > NC_002947/1839861‑1840149 | gCAGGACCTGAAGCAGGCTGCCGAAACCCTGGGTATCGGTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGa > 8:194995/1‑149 (MQ=255) cAGGACCTGAAGCAGGCTGCCGAAACCCTGGGTATCGGTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGAt < 7:194995/149‑1 (MQ=255) aGGACCTGAAGCAGGCTGCCGAAACCCTGGGTATCGGTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATg < 8:260235/149‑1 (MQ=255) ccTGAAGCAGGCTGCCGAAACCCTGGGTATCGGTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGc > 4:89928/1‑148 (MQ=255) tGAAGCAGGCTGCCGAAACCCTGGGTATCGGTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAg > 7:302884/1‑149 (MQ=255) gAAGCAGGCTGCCGAAACCCTGGGTATCGGTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAg > 3:124191/1‑148 (MQ=255) aGGCTGCCGAAACCCTGGGTATCGGTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGAt < 8:61984/136‑1 (MQ=255) aGGCTGCCGAAACCCTGGGTATCGGTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGAt > 7:61984/1‑136 (MQ=255) ccGAAACCCTGGGTATCGGTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTgg > 7:66692/1‑147 (MQ=255) ccGAAACCCTGGGTATCGGTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGaa < 4:112738/149‑1 (MQ=255) ccGAAACCCTGGGTATCGGTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGaa < 7:295490/149‑1 (MQ=255) cGAAACCCTGGGTATCGGTTTCACCGTGTTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAg > 7:7209/1‑149 (MQ=255) cccTGGGTATCGGTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTg < 8:204677/149‑1 (MQ=255) ggTATCGGTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAg < 8:66692/147‑1 (MQ=255) tCGGTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAg < 6:41221/149‑1 (MQ=255) ggTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGAt < 5:133320/149‑1 (MQ=255) gTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑Gtt > 1:323340/1‑136 (MQ=255) gTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑Gtt < 2:323340/136‑1 (MQ=255) gTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGATGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGAt > 4:155661/1‑148 (MQ=255) ccGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGcc < 2:29502/149‑1 (MQ=255) cttgtttGCCCAGGACCCGGCCGAGCGGTATGAGCTGCCTCTCAGCGAGGCGTTGCTGGTGACCTAAATCATCTACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGGGAGGAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGccc < 8:7209/144‑1 (MQ=255) cGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCa < 1:275590/137‑1 (MQ=255) cGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCa > 2:275590/1‑137 (MQ=255) cGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTc < 8:302884/149‑1 (MQ=255) cTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAAGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCa < 3:17925/140‑1 (MQ=255) cTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAAGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCa > 4:17925/1‑140 (MQ=255) tATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGc < 4:311960/138‑1 (MQ=255) tATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGc > 3:311960/1‑138 (MQ=255) gCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTcgcg < 6:342778/149‑1 (MQ=255) gcgcAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GATGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCCGGGCCGCTTTACCGGcc > 5:45419/1‑149 (MQ=255) cAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGc > 8:229714/1‑145 (MQ=255) cAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGc < 7:229714/145‑1 (MQ=255) gAGGCGTTGCCGGTGACCTACATCGTCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCa > 6:239050/1‑148 (MQ=255) gCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGATTTCGCGGCCCCGGCAATc < 4:124191/148‑1 (MQ=255) gCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTCGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAg > 1:267961/1‑96 (MQ=255) gCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTCGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAg < 6:246517/96‑1 (MQ=255) gCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTCGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAg > 5:246517/1‑96 (MQ=255) gCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTCGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAg < 2:267961/96‑1 (MQ=255) tGCCGGTTACCTACATCATGGACGAACAGGGCAAGGGGCGTTATCATGTGAAGGGCGAGCATCCCCTGGAAGG‑GTTGCAGGCCAAGATCAATGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCAATCCTCAg < 6:375532/149‑1 (MQ=255) gccgtgtaCCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCAATCCTCAg < 6:5200/141‑1 (MQ=255) ccTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGTTGGGCGAGCAGACCGTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCAATCCTCAGCCTTCCTCg < 3:155661/149‑1 (MQ=255) tACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCCCTTTCGCGGCCCCGGCAATCCTCAGCCTTCCTCggg > 7:276007/1‑149 (MQ=255) aCATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCAATACTCAGCCTTACTCCGGc > 1:185312/1‑149 (MQ=255) atcatcGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGgcgc > 4:284498/1‑92 (MQ=255) atcatcGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGgcgc < 3:284498/92‑1 (MQ=255) atcatcGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCAATCCTCAGCCTTCCTCGGGc > 5:21042/1‑147 (MQ=255) atcGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCaa > 2:306021/1‑68 (MQ=255) atcGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCaa < 1:306021/68‑1 (MQ=255) gacgacAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCAATCCTCAGCCTTCCTCGGGCCAGAAgcg > 4:238504/1‑149 (MQ=255) acgacAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCAATCCTCAGCCTTCCTCGGGCCAGAAgcg > 1:194355/1‑148 (MQ=255) gacAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGGTGTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCAATCCTCAGCCTTCCTCGGGCCAGAAGCGCa > 1:93514/1‑149 (MQ=255) ctcgggCAAGGTGCGTGAGCACTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAACCTCAAGGCCCGGAAAGGCGCCTGAGGCTTTCGGGGCCGCTTTCGCGGCCCCGGCAATCCTCAGCCTTCCGCGGGCCAGAATCGCAGCg < 2:320252/146‑1 (MQ=255) ggCAAGGTGCGTGAGCAGTTGATGGGCGTGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCAATCCTCAGCCTTCCTCGGGCCAGAAGCGCAGCGGCtt > 1:212037/1‑149 (MQ=255) ggCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCAATCCTCAGCCTTCCTCGGGCCAGAAGCGCAGCGGCtt > 5:84657/1‑149 (MQ=255) cAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCAATCCTCAGCCTTCCTCGGGCCAGAAGCGCAGCGGCTTGc < 2:194355/149‑1 (MQ=255) gTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCAATCCTCAGCCTTCCTCGGGCCAGAAGCGCAGCGGCTTGCCTTc > 4:299498/1‑149 (MQ=255) gTGCGTGAGCAGTTGATGGGCGAGCAGACCCGGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCCCGTTCGCGGCCCCGGCCCTCCTCAGCCGTCCACGGGCCAGCAGCCCCGCCGCGTGCCATc > 6:235875/1‑149 (MQ=255) gCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCAATCCTCAGCCTTCCTCGGGCCAGAAGCGCAGCGGCTTGCCTTCgg < 3:280069/143‑1 (MQ=255) gCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCAATCCTCAGCCTTCCTCGGGCCAGAAGCGCAGCGGCTTGCCTTCgg > 4:280069/1‑143 (MQ=255) gCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCAATCCTCAGCCTTCCTCGGGCCAGAAGCGCAGCGGCTTGCCTTCGGCTGGc > 2:203131/1‑148 (MQ=255) | GCAGGACCTGAAGCAGGCTGCCGAAACCCTGGGTATCGGTTTCACCGTGCTTGCCCAGGACCCGGCCGAGCGCTATGACCTGCCGCGCAGCGAGGCGTTGCCGGTGACCTACATCATCGACGACAAGGGCAAGGTGCGTGAGCAGTTGATGGGCGAGCAGACCCTGGAAGG‑GTTGCAGGCCAAGATCAAGGCCCTGAAAGGCGCCTGATGCATTCGGGGCCGCTTTCGCGGCCCCGGCAATCCTCAGCCTTCCTCGGGCCAGAAGCGCAGCGGCTTGCCTTCGGCTGGC > NC_002947/1839861‑1840149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |