| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,551 | C→G | 12.5% | T1019T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,551 | 0 | C | G | 12.5% | 323.6 / 33.1 | 127 | T1019T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (54/56); new base G (10/6); total (65/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.24e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.86e-01 | |||||||||||
Only 100 of 130 total aligned reads displayed.
CACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGG > NC_002947/197407‑197699 | aCGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATACTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTAc > 3:10690/1‑149 (MQ=37) cGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTAcc < 4:53999/149‑1 (MQ=37) cGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCCGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTAcc < 7:298641/149‑1 (MQ=37) gATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGCCCCTGTCCAACGGCCAAACCATTACCg > 4:246885/1‑149 (MQ=37) gATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCg > 2:366819/1‑149 (MQ=37) tCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑tt < 2:316635/149‑1 (MQ=37) aaCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTg < 4:155098/148‑1 (MQ=37) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTg > 3:70386/1‑147 (MQ=37) aCGACTCGGTCGATGCCACCACCGCGAACCTGACGGCGAGCCCGTCGGTCAACGAAGTCGGCGTGATCACCTACACCGTGATACTGAGCAATCCTGCCCAGACGCCGGGCACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTg > 5:181743/1‑147 (MQ=11) cTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCg < 7:216372/149‑1 (MQ=37) tCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCgg > 5:198033/1‑149 (MQ=37) gggcGATGCCACCACCGCGACCCTGACGGCGAGCGCGGCGGTCACCGAAGGCGTCGTGATCACCTACACCCTTATCCTCAGCAATCCTGCCCAGACTCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAggcggc < 6:181743/145‑1 (MQ=11) ggTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGc < 3:41622/148‑1 (MQ=37) ggTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGc < 4:369175/148‑1 (MQ=37) gTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGc > 5:146806/1‑147 (MQ=37) gTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGc < 6:146806/147‑1 (MQ=37) cGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCATGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGa > 1:72862/1‑149 (MQ=37) ccacccCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACCCCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCa < 8:302232/148‑1 (MQ=255) caccacCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAgg > 5:303012/1‑149 (MQ=37) caccacCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAgg > 6:372442/1‑149 (MQ=37) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAggg > 5:14729/1‑149 (MQ=37) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGt > 3:362560/1‑149 (MQ=37) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGt > 1:171143/1‑149 (MQ=37) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTTATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGAt < 7:194041/149‑1 (MQ=37) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑tt > 6:206671/1‑117 (MQ=39) gACTGCGAGCCCGTCGGTCACCGACGGCGGCGTGATCACCTACACCGTTATCCTGAGCAATCCTGCCCAGACGCCGGAAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAATCCGGCAAGACCCAGGGCAGc < 8:237011/139‑1 (MQ=11) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTcc < 6:291825/148‑1 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTc > 4:207896/1‑147 (MQ=37) gCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCg < 5:372442/149‑1 (MQ=37) gCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCg > 5:188148/1‑149 (MQ=37) ccGTCGGGCACAGAAGTCGGCGTGATCACCTACACCGTGATCCTGAGCAAGCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGc < 4:10690/149‑1 (MQ=255) cttCGGTCACCGAATTCGGCGTGATTACCTTCACCGTGTTTCTGAGCAATTTTGTCCTGACTCCGGTAACAGTGTCCCTGTTCAACGGCCAAACCATTACCG‑TTg < 7:239347/103‑1 (MQ=2) cGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATACTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑ttt > 8:239347/1‑104 (MQ=255) gTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGa < 4:70386/149‑1 (MQ=37) tCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTTGATTTCCAGACCCCGGCGAATGAc < 4:362560/149‑1 (MQ=37) aCCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTcc < 1:189455/130‑1 (MQ=38) aCCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTcc > 5:254698/1‑130 (MQ=38) aCCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCACGGCAGCGTCGATTTcc < 6:254698/130‑1 (MQ=38) ccGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 1:208114/1‑149 (MQ=37) ccGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGCCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCa < 2:281752/130‑1 (MQ=38) ccGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTCTCCAACGGCCAAACCATTACCG‑TTGAAGCGGGCAAGACCCAGGGCAGCGTCGATTTCCAGACGCCGGCGAATGACGt > 8:331477/1‑148 (MQ=255) cGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCa < 1:248845/130‑1 (MQ=255) cGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCa > 2:248845/1‑129 (MQ=38) cGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 7:130004/1‑148 (MQ=37) aaGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac < 1:310765/149‑1 (MQ=37) aGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTAc < 5:171296/87‑1 (MQ=38) aGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTAc > 6:171296/1‑87 (MQ=38) ggcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa > 2:35669/1‑149 (MQ=37) tGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGt < 1:35669/149‑1 (MQ=37) aTCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa < 3:333878/143‑1 (MQ=37) aTCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa > 4:333878/1‑143 (MQ=37) tCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 1:131270/1‑148 (MQ=37) cACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTac < 8:110610/136‑1 (MQ=255) aCCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 7:119116/148‑1 (MQ=37) aCCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 2:131270/148‑1 (MQ=37) aCCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 7:32629/148‑1 (MQ=37) aCCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc > 5:112013/1‑149 (MQ=37) cacCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTc < 6:112013/148‑1 (MQ=39) tGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCg < 2:352259/137‑1 (MQ=37) tGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCg > 1:352259/1‑137 (MQ=37) gATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCa > 5:72623/1‑149 (MQ=21) aTCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGTCCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCa < 7:119488/148‑1 (MQ=18) aTCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCa < 3:207896/148‑1 (MQ=18) gAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATc > 3:222355/1‑148 (MQ=17) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTacaa > 6:271422/1‑119 (MQ=35) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTacaa < 5:271422/119‑1 (MQ=35) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATc < 3:118602/147‑1 (MQ=37) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCg < 1:133389/148‑1 (MQ=17) gCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCga < 2:171143/148‑1 (MQ=17) cTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGt < 3:59177/79‑1 (MQ=39) ccAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAg > 3:254001/1‑149 (MQ=9) cAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAgg < 1:95230/149‑1 (MQ=255) aCGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGCCCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGACAACGCCACAGGCgg > 2:188569/1‑149 (MQ=11) aCGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑ATGAAGCCGGCAACACCCACCGCAGCGTCGATTTCCAGACCCCGGCGAATCACGTCTACAACAACGGATCGACCGTCACCCTCCCCAACGATAACGCCACAGGCgg > 2:366736/1‑149 (MQ=11) cGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAt > 6:309073/1‑149 (MQ=37) gtgaCCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGCCTTCCAGACCCCGGCGAATGACGGCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAttt > 4:244227/4‑149 (MQ=11) tAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 6:72623/149‑1 (MQ=14) aCCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCg < 5:135547/148‑1 (MQ=34) cGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGaa > 3:232863/1‑81 (MQ=31) cGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGaa < 4:232863/81‑1 (MQ=31) cGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCACGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGAAATTTCGAg > 1:305649/1‑148 (MQ=17) gTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGc > 1:359039/1‑148 (MQ=32) tGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa < 6:198033/149‑1 (MQ=32) ccTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 6:385910/1‑149 (MQ=12) cTGGCCAACGCCCAAACGATTACCT‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 6:268597/140‑1 (MQ=11) tCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAccc < 2:208114/148‑1 (MQ=32) cAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGCCAGCGTCGATTTCAAGACCACGGCGAATGACGTCTACAACAACGGTACGACTGTCAGCGTCACCATCCACAACGCCACAGGCGGAAATTTCGAGAAACTGACCCCg > 5:198559/1‑148 (MQ=11) aaCGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc < 1:355406/143‑1 (MQ=12) cGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAcc < 2:31571/149‑1 (MQ=16) ccAAACGATTACCG‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCTACTTACAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGa < 7:20479/149‑1 (MQ=11) cAAACCATTACCG‑TTGAAGCCGCCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGCTTCGACTGTCAGCGTCACCATCGAGAACGCAACAGGCGGTAATTTCGATCAACTGAACACCAACCCGAc > 8:82880/1‑149 (MQ=11) cAAACCATTACCC‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCACGAACCCGAc < 8:130004/149‑1 (MQ=21) aaaCGATTACCG‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAcc > 1:282027/1‑148 (MQ=255) aaaCCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCcac < 1:218237/112‑1 (MQ=32) aaaCCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACg > 3:134182/1‑149 (MQ=35) aaaCCATTACCG‑TTGAAGCCGGCAAGACACAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCcac > 2:218237/1‑112 (MQ=17) aaCGATTACCG‑TTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAccc > 2:14342/1‑147 (MQ=255) aaCCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGc < 6:136515/149‑1 (MQ=35) cATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt > 4:127520/1‑82 (MQ=31) cATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 3:127520/82‑1 (MQ=31) | CACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGG > NC_002947/197407‑197699 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |