Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,052,785 | A→T | 8.9% | intergenic (+17/+33) | prmB → / ← PP_1828 | N5‑glutamine S‑adenosyl‑L‑methionine‑dependent methyltransferase/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,052,785 | 0 | A | T | 8.9% | 155.5 / 5.4 | 56 | intergenic (+17/+33) | prmB/PP_1828 | N5‑glutamine S‑adenosyl‑L‑methionine‑dependent methyltransferase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (27/23); new base T (3/2); total (31/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.43e-01 |
TGTCGAGGCGTTGTACCCCGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCAT > NC_002947/2052642‑2052933 | tGTCGAGGCGTTGTACCCCGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCgg > 2:190171/1‑149 (MQ=255) gAGGCGTTGTACCCCGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGccc > 8:101785/1‑148 (MQ=255) aGGCGTTGTACCCCGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGGTTAGGCTATTTGGGGCCGCGCAGCGGCCCt > 4:254730/1‑148 (MQ=255) gTACCCCGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTcc < 5:221463/148‑1 (MQ=255) cccGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCgg < 5:241376/149‑1 (MQ=255) ggTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGAt < 1:206291/149‑1 (MQ=255) gTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATg > 2:30840/1‑149 (MQ=255) ggACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCg > 5:173305/1‑149 (MQ=255) gACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCgg < 6:142722/149‑1 (MQ=255) gACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCAGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCgg > 2:78932/1‑149 (MQ=255) cTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTc > 2:92670/1‑149 (MQ=255) ctggctggAGTTCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCg > 7:65355/1‑149 (MQ=255) gctggAGTTCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCgg < 1:190171/147‑1 (MQ=255) gctggAGTTCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCgg < 1:78932/147‑1 (MQ=255) ggAGTTCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTACCCCGGCTGATGCTGTCTAAGCGGGTAg > 6:377259/1‑148 (MQ=255) ttCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATc > 2:35513/1‑149 (MQ=255) gAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAg < 6:70766/149‑1 (MQ=255) gAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGCGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCa < 7:101785/148‑1 (MQ=255) gcggggcgggCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGAt < 1:35513/149‑1 (MQ=255) gcATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGccc > 1:291342/1‑149 (MQ=255) ggggTATTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCgg > 6:56980/1‑104 (MQ=255) ggggTATTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCgg < 5:56980/104‑1 (MQ=255) ggTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCcctgcctg < 6:40705/149‑1 (MQ=255) gaTGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTTCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAaca < 5:377259/147‑1 (MQ=255) aTGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCTATCCAGATCAACAGCCCTGCCTGGAACACg < 1:30840/149‑1 (MQ=255) aCCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACg < 2:375646/143‑1 (MQ=255) aCCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACg > 1:375646/1‑143 (MQ=255) ccgccAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGc > 5:136959/1‑76 (MQ=255) ccgccAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGc < 6:136959/76‑1 (MQ=255) ccgccAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACcaggcagg < 6:173305/148‑1 (MQ=255) gCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGt > 7:17324/1‑149 (MQ=255) aTCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTg > 3:64870/1‑148 (MQ=255) aGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAAc > 6:305782/1‑149 (MQ=255) ggAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGccac < 8:314712/128‑1 (MQ=255) ggAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGccac > 7:314712/1‑128 (MQ=255) ttGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAAt < 2:291342/149‑1 (MQ=255) ttGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAAt < 1:92670/149‑1 (MQ=255) cAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCgg > 1:354691/1‑54 (MQ=255) cAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCgg < 2:354691/54‑1 (MQ=255) cAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATccgcc > 8:285954/1‑149 (MQ=255) aGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGTCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGt > 3:132817/1‑149 (MQ=255) ccTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATg < 1:283607/126‑1 (MQ=255) ccTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATg > 2:283607/1‑126 (MQ=255) ccTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTc > 3:244783/1‑149 (MQ=255) ccTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTc > 2:187582/1‑149 (MQ=255) tCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTcgc > 6:286035/1‑149 (MQ=255) tCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTcgc > 2:244610/1‑149 (MQ=255) tttAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCt > 1:331796/1‑149 (MQ=255) tATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGt < 6:56713/116‑1 (MQ=255) tATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGt > 5:56713/1‑116 (MQ=255) aattagggCCGCTTCGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCgcgc < 2:135517/135‑1 (MQ=255) aattagggCCGCTTCGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCgcgc > 1:135517/6‑140 (MQ=255) tttGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTAttt < 8:65355/147‑1 (MQ=255) ttagggCCGCTTCGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTAttt < 3:338717/143‑1 (MQ=255) ttagggCCGCTTCGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTAttt > 4:338717/4‑146 (MQ=255) gggCCGCTTCGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTAc > 4:241192/1‑149 (MQ=255) aaGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCAt > 3:328613/1‑149 (MQ=255) | TGTCGAGGCGTTGTACCCCGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGCATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCAGGAATTGTTCAAGGCCCTCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAAACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCAT > NC_002947/2052642‑2052933 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |