| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,193,120 | G→T | 7.8% | intergenic (+214/‑209) | PP_1938 → / → PP_1939 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,193,120 | 0 | G | T | 7.8% | 242.3 / 7.4 | 76 | intergenic (+214/‑209) | PP_1938/PP_1939 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (29/41); new base T (3/3); total (32/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 | |||||||||||
GATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCGGGTCCATTGTAAATCGCTGCCCTTC > NC_002947/2192973‑2193268 | gATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAg < 1:271685/148‑1 (MQ=255) aTTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAgg > 1:82883/1‑148 (MQ=255) ttctttctGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAgg > 1:55329/1‑147 (MQ=255) ttctttctGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAgg > 2:42768/1‑147 (MQ=255) ttctGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGt > 7:84645/1‑147 (MQ=255) tctGCGAGCGGATCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCAGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTc < 2:56729/147‑1 (MQ=255) cGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGa > 8:331883/1‑149 (MQ=255) agcggagcgAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGAct > 4:126124/1‑149 (MQ=255) gcggagcgAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGCCTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGAct > 8:317863/1‑148 (MQ=255) cggagcgAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGActtc < 1:92034/149‑1 (MQ=255) ggagcgAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGActtct > 2:168332/1‑149 (MQ=255) agcgAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTa < 1:177318/149‑1 (MQ=255) cgAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACt > 8:9853/1‑149 (MQ=255) cgAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACt < 7:331883/149‑1 (MQ=255) aaCAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTgg > 1:20404/1‑149 (MQ=255) aaCAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTgg > 6:278494/1‑149 (MQ=255) aCAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGt > 4:234835/1‑149 (MQ=255) aGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGACCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTcg < 6:15415/149‑1 (MQ=255) gCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTcgc > 7:153112/1‑149 (MQ=255) gCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTcgc < 7:9853/149‑1 (MQ=255) cccGTACCTGAGTCGGGCTAATTGAACGGCCGGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTGCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGa < 8:187845/148‑1 (MQ=255) cGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAgtg < 1:283886/149‑1 (MQ=255) cGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAgtg < 3:302830/149‑1 (MQ=255) tACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGtgtg < 1:42768/149‑1 (MQ=255) gAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAg > 4:357137/1‑149 (MQ=255) aGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCa < 8:153112/147‑1 (MQ=255) aGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCa < 3:234835/147‑1 (MQ=255) aGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAgg < 2:82883/149‑1 (MQ=255) tCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTcagca < 5:300128/116‑1 (MQ=255) tCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTcagca > 6:300128/1‑116 (MQ=255) gggCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGActtc > 8:279124/1‑120 (MQ=255) gggCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGActtc < 7:279124/120‑1 (MQ=255) aCGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGgtctgt < 3:357137/149‑1 (MQ=255) cccGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGc < 2:327869/149‑1 (MQ=255) ccGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCg < 8:84645/149‑1 (MQ=255) gACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCTGGATG‑Att > 4:243276/1‑133 (MQ=255) gACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑Att < 3:243276/133‑1 (MQ=255) cTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGAtt > 2:93278/1‑149 (MQ=255) cTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGAtt < 3:272635/149‑1 (MQ=255) tCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTg < 1:168332/147‑1 (MQ=255) gcgAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCgg > 3:356596/1‑148 (MQ=255) gAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGaaa < 3:126124/149‑1 (MQ=255) gAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGaaa < 5:288672/149‑1 (MQ=255) gAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATA‑ATTCAGGTCTGTCTGCGGATTGCGGaaa < 1:21689/149‑1 (MQ=255) ggTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTc < 5:96684/149‑1 (MQ=255) tATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCa < 2:55329/148‑1 (MQ=255) aTGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATc > 2:161417/1‑149 (MQ=255) tGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATc < 2:229002/108‑1 (MQ=255) tcaGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGtc > 7:20915/1‑149 (MQ=255) tGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGc < 8:52200/120‑1 (MQ=255) tGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGc > 7:52200/1‑120 (MQ=255) tGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTAcc > 6:334900/1‑149 (MQ=255) cTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACcg < 7:317863/148‑1 (MQ=255) cccTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTc > 3:225343/1‑123 (MQ=255) cccTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTc < 4:225343/123‑1 (MQ=255) cccTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACcgcg < 5:334900/147‑1 (MQ=255) cccTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACcgcg < 5:278494/147‑1 (MQ=255) cccTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGc > 8:176424/1‑149 (MQ=255) tAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTc > 1:185969/1‑149 (MQ=255) gCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTccg < 2:20404/149‑1 (MQ=255) taatgtgCAAATTCTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTccgc > 5:377162/4‑149 (MQ=255) tgCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGc < 7:334417/138‑1 (MQ=255) tgCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGc > 8:334417/1‑138 (MQ=255) tttGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGccc < 8:20915/149‑1 (MQ=255) cacaTTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGATAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGc < 1:93278/148‑1 (MQ=255) acaTTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCgg < 2:185969/149‑1 (MQ=255) acaTTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCgg > 7:222065/1‑149 (MQ=255) acaTTACTAGGGGCTGAATGAATAGGCAGTCAGCAGACTTCTTACTGGTCGAGTAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCAATACCTAGGCATCCGCCGAGAAGGGACCatctt > 5:43206/1‑145 (MQ=255) aCTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCGGGTcc < 6:377162/148‑1 (MQ=255) gggCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCGGGTCCATTGt > 4:11981/1‑148 (MQ=255) tgCTGACTGCCTATTCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCg > 4:178558/2‑137 (MQ=255) tgCTGACTGCCTATTCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCg > 8:352138/2‑137 (MQ=255) tgCTGACTGCCTATTCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCg < 3:178558/136‑1 (MQ=255) tgCTGACTGCCTATTCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCg < 7:352138/136‑1 (MQ=255) gCTGACTGCCTATTCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCGGGTCCATTGTaa > 5:176049/1‑148 (MQ=255) gCTGACTGCCTATTCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCGGGTCCATTGTaa < 6:176049/148‑1 (MQ=255) gCTGACTGAATAGGCAGTCAGCAGTCTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCGGGTCCATTGTaaa < 5:144575/149‑1 (MQ=255) actgaATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCGGGTCCATTGTAAATc < 4:356596/147‑1 (MQ=255) actgaATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCGGGTCCATTGTAAATc < 7:176424/147‑1 (MQ=255) ctgaATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGAATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCGGGTCCATTGTAAATCGc > 1:289070/1‑149 (MQ=255) ggCAGTCAGCAGACTTCTTACTGGTCGCGTAGTGTTATCACGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGGCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCGGGTCCATTGTAAATCGCTGCCCTTc < 8:222065/149‑1 (MQ=255) | GATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCGACTTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATG‑ATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCGGGTCCATTGTAAATCGCTGCCCTTC > NC_002947/2192973‑2193268 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |